[Artemis-users] clusters

2008-07-08 Thread Duffield Melanie L
Hello, I think I may be a little ambitious here but I have a cluster of genes on one strand that appear to all be involved in lipopolysaccharide synthesis of bacteria. However,on the opposite strand there appears to be other genes also potentially involved in lipopolysaccharide synthesis. Is

[Artemis-users] v9

2008-02-20 Thread Duffield Melanie L
Hi, I am trying to get Artemis v9 set up on a networked Unix computer (or at least co-ordinate with our IT people to do this). I have it running locally on a stand-alone but we want to make it more widely available. I now have Artemis runnng but still have some problems. Firstly, I get the

[Artemis-users] Intergenic region extraction

2007-12-12 Thread Duffield Melanie L
Hello, I would like to extract all the non-coding region of sequence from my bacterial sequence and write this out to a file. Is there any way of doing this in Artemis? I can select all CDS or genes and I've tried toggle selection but this then selects any features not previously selected

[artemis-users] ACT comparisons -

2003-10-13 Thread Duffield Melanie L
Hello, I am trying to do an ACT comparison using big_blast on two constructions of the same partial genome (one with 4 contigs and one with 3 to see where the various pieces have been joined together). I was therefore expecting large blocks of identical sequence showing rearrangement etc.