Hi Louis
You need to read in the bgzip'ed vcf file not the tabix index file. It is
expecting a file to be loaded with the suffix .vcf.gz rather than .tbi. It
will then automatically look for the index (.tbi) file in the same directory
as the VCF file.
Regards
Tim
On 3/17/12 2:48 PM, Louis Grandjean drlouisgrandj...@hotmail.com wrote:
Dear All,
I'm new to Artemis and have had problems reading in vcf files. I've indexed
the vcf files using bgzip and tabix as detailed in the manual and I'm also
using the Artemis developer version 14.0. First I load in the reference embl
file with no problems then go to File Read VCF and select my .tbi file
output from tabix. However nothing appears on the screen. I'm not sure where
I'm going wrong. Any help would be gratefully appreciated.
Best wishes
Louis
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