> You would be able to write a python script and use subprocess to run this
> command multiple times.
Well, I’d suggest using the Python interface (Pybel):
http://openbabel.org/docs/current/UseTheLibrary/Python.html
In either case, Patrick is correct - I’d ask the question on the Open Babel
Hi there Ana,
If you just need a file translator, you might want to consider using Open
Babel directly: http://openbabel.org/wiki/Main_Page
Avogadro uses Open Babel for a lot of its file translations. After you
compile/install open Babel and get the executables, you just need to run
something
I wish I could use Avogadro from the terminal, either Windows or Linux. I don’t
need GUI and actually need to use Avogadro as a file translator for 100K files
(approximately), avogadro reads my file properly and is able to save it as
smiles (as the test has shown), but I need somewhat like:
