Hi All,
I thought this would be of interest to the group, my apologies if you
have already received this.
> Dear Colleagues,
>
> Apologies if you receive this more than once.
>
> This is the final announcement for the Microarray Gene Expression
> Data (MGED) society and the Australasian Microar
Bob MacCallum wrote:
>
> > Emmanuel Courcelle wrote:
> > > Hello
> > >
> > > Trying to use BASE with affymetrix data.
>
> me too!
>
> > > 2/ I can't see any new Reporter in the View/Reporters
> >
> > You need to import the reporter from a reporter annotation file (.csv).
> > See
>
Hello Bob,
> Dumb question: An Annotation Type such as "Age(hours)" or "body mass(kg)" when
> applied to a biosource will be exported as a BioMaterialCharacteristic, right?
>
Yes, they will.
Also an important point: since tab2mage specifications only allow for
BioMaterialCharacteristics to be
Hello,
Just a couple of things regarding using Affymetrix with BASE.
i. We are just about to release a plugin to create ArrayDesigns from a
bunch of zipped CDF files.
This should speed up part of the process of managing Affymetrix Designs.
Will post when ready.
ii. I have a little simple perl
Hi Bob
> http://base.thep.lu.se/chrome/site/doc/html/userdoc/analysis/experiments_analysis.experiments.html#experiments_analysis.magexport
>
> Dumb question: An Annotation Type such as "Age(hours)" or "body mass(kg)" when
> applied to a biosource will be exported as a BioMaterialCharacteristic, r
> Emmanuel Courcelle wrote:
> > Hello
> >
> > Trying to use BASE with affymetrix data.
me too!
> > 2/ I can't see any new Reporter in the View/Reporters
>
> You need to import the reporter from a reporter annotation file (.csv).
> See
> http://lev.thep.lu.se/trac/baseplugins/brows
Hi,
We're making a concerted effort to move operations to BASE 2 now...
I have been reading up on annotating experiments in preparation for future
tab2mage export:
http://base.thep.lu.se/chrome/site/doc/html/userdoc/analysis/experiments_analysis.experiments.html#experiments_analysis.magexport
