Bob MacCallum wrote: > > > Emmanuel Courcelle wrote: > > > Hello > > > > > > Trying to use BASE with affymetrix data. > > me too! > > > > 2/ I can't see any new Reporter in the View/Reporters > > > > You need to import the reporter from a reporter annotation file (.csv). > > See > > > http://lev.thep.lu.se/trac/baseplugins/browser/tags/se/lu/thep/affymetrix-0.6/README > > for details. > > could someone point me to these .csv files please? > > I've downloaded the xxx_libraryfile.zip (containing a .cdf file amongst > others) but no .csv file. Do you get this from NetAffx online?
Just for information. Base 2.4 will include a plug-in that can create reporters directly from a CDF file. The plug-in can only set the probeset ID since that is the only info that is available in the CDF. To get other annotation information you still need the .csv file(s). There will also be validation to make sure that CEL:s are matched with the proper CDF:s. These two things should make it easier and less error-prone to use Affymetrix data and the RMAExpress and Plier plug-ins. /Nicklas ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
