Hi
I would know if it's possible to use dtt or cab format with BASE ?
Regards
--
Joel Masciocchi
Engineer of Bioinformatics Service Line
CRS4 - Bioinformatics
Loc. Pixina Manna Edificio 3 Pula 09010 (CA), Italy
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This SF
There is no support for ddt or cab. Currently only cdf and cel files are
supported by the Affymetrix plug-ins. Annotation files (.csv) are used for
uploading probeset (reporter in BASE language) information.
The issue of supporting ddt and cab files is an import and a plug-in
issue. There are two
Hi Nicklas,
Thanks for the reply.
Nicklas Nordborg writes:
> > 2. I think there's some inconsistent handling of trailing spaces in the
> >"reporter ID" column of a genepix .gpr file. For example I can import
> >reporters, and create an array design from the file pasted below, but I
> Note, to include ddt and cab support to BASE, the file formats must be
> open, that is we must be able to read them without proprietary
> non-distributable code.
There probably isn't much point adding support for CAB files at this late stage
because Affy's new (free) software solution for instr
> > In the meantime you can try using a splitter regexp that also removes
> > white-space. Try something like \s*\t\s* instead of just \t. I have not
> > tested this but it might be enough to make it work.
>
> I guessed there would be a neat trick like this, but couldn't think of it last
> ni
