[base] mass annotation of raw bioassays in BASE 2.8.4 -- problem with name/ID mapping

2008-11-21 Thread Micha Bayer
Hi, When configuring the mass annotation importer plugin, an error is thrown when one has mapped only the names of the raw bioassays, and not their ID: A mapping for either 'Name' or 'Internal ID' must be given. This happens even when the mapping for the name has already been provided. When

[base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Micha Bayer
Hello again, I can't get the raw bioassay batch importer to attach actual file objects to the raw bioassays I am importing. I have - provided a data column with file names in my data batch import file - mapped this column to the File property in the import config - provided a path to the data

Re: [base] mass annotation of raw bioassays in BASE 2.8.4 -- problem with name/ID mapping

2008-11-21 Thread Nicklas Nordborg
Bob MacCallum wrote: We have to inherit from just one of the two biosources because BASE doesn't know which is experimental (ch1) and which is control (ch2). BASE will later choose one arbitrarily (in Experiment Explorer for example). No, this was a bug that was fixed in

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Jari Häkkinen
Are the raw data files visible to the plug-in? If you upload the files with ftp they are not automatically assigned to a project. You need to set the parameter defining how the plug-in should find existing items referenced in the file. If this is not the problem, can you try to only map the

Re: [base] problem attaching files to raw bioassays using the batch importer -- BASE 2.8.4

2008-11-21 Thread Jari Häkkinen
I have not encountered any problems with attaching files earlier. I decided to play around with partially filled import files. I succeeded in creating a file that fails to attach files even though the importer reports success. BASE 2.8.4 and my 2.9pre test version both fails but the resolution