Hi,
I'm importing the following plate information through the plate "384_wells
import plate".
384_number 384_column 384_row 384_position oligo_id
plate_1 1 A A1 SEQ12345
plate_1 2 A A2 SEQ12346
plate_1 3 A A3 SEQ12347
The importing works fine but the row letters are converted into strings and
+1
Hi,
After checking the sql structure of the database I realized that the table
PlateMappingDetails contains indeed int values for all fields. I would have
imagined that one could eventually use a letter instead of an integer.
What do you think ?
Thanks Nicklas for you quick answer regarding the conversion from string to
int.
I have decided to import the data using the string to int conversion.
However I'm trying to export the plate wells back again to a file using the
default exporter and get a bug. I'm not sure that in this case the nu
Hello,
I'm trying to import a GPR file and had some problems. I have submitted the
bug to the base ticketing system. The problem comes from assigning incorrect
wavelengths to the dyes CY5 and CY3 (view opened ticket #467). In the bug
descriptions I also submit the correct parameters that need to b
Hello,
Following the advise given to emanuel for the generation of the spots, I
went through the example but could'nt manage to create the spots.
Do i have to submit three time the tiff file to create the spots in the
editor (it's asking for jpeg files°. Anyway the jpeg files didn't work, i
was ge
and tiff image to try and see how it works ??
david vilanova wrote:
Hello,
Following the advise given to emanuel for the generation of the spots, I
went through the example but could'nt manage to create the spots.
Do i have to submit three time the tiff file to create the spots in the
edit
u 0:02
Do you think the problem comes from genepix when saving into tif files.
I'm going to save separete tif files and see if i can create correct spots
from these.
david vilanova wrote:
Hello,
I have tried with:
PixelSize="10"
ImageOrigin="4440,1000"
I have double
Hi folks,
I finally managed to identify the problem. As i said in my previous email i
tried a tif image with only a signe channel:
[EMAIL PROTECTED] SPOTS]$ ls *
-rw-r--r-- 1 david bioinfo 9,1M Jan 23 12:19 532.tif
-rw-r--r-- 1 david bioinfo 9,3M Jan 23 12:20 635.tif
-rw-r--r-- 1 david bioinfo 2
Hello Ana,
I had the same problem a while a go...
Indeed Base does not handle this yet as it is expecting a value for this
field. It may seem strange but it's like that at the moment.
The way around solution is to ignore the lines that contains the string
error in the parser(configure the plugin m
the importer (a pity
for the M value) and compute this in a later step. I am not yet that far in
BASE, so I do not know at the moment how you do this, but I expect this will
be possible.
Thanks anyway
Ana
At 12:03 02/03/2007, david vilanova wrote:
Hello Ana,
I had the same problem a while a g
t;
>
>
> Here's a handy link for seeing all the latest tickets (solved or not).
>
> http://base.thep.lu.se/query?order=id&desc=1
>
> cheers,
> Bob.
>
>
> david vilanova writes:
> > Hello,
> > I have found two bugs or i may not have used it properly.
sorry , i made a mistake , it's not hybridization but multiple array
creation...
Hello,
Cannot modify pad size value to two digits (e.g 10) when creating multiple
batch arrays. Only one digit is accepted.
Using base 2.6.1
Hello,
Cannot modify pad size value to two digits (e.g 10) when creating multiple
batch arrays. Only one digit is accepted.
Using base 2.6.1
david
-
This SF.net email is sponsored by the 2008 JavaOne(SM) Conference
Don't mis
Hello,
I have updated to 2.6.2 and bug 4203 is still there although a fix has been
added.
I think the bug is not full corrected ??
david
-
This SF.net email is sponsored by the 2008 JavaOne(SM) Conference
Don't miss this ye
#x27;s name is still not set to anything
> "sensible"
> but the labeled extract was correctly linked when I tested it (once or
> twice,
> I normally create hybs from the list view checkboxes).
>
> I don't think the hyb name issue was ever logged as a bug or featur
Hello,
Are there any plans to support luminex expression data based on beads ?
The overall workflow for tracking the samples is the same, the only think
that change is that instead of usign arrays, it would be beads.
If not , do you knwo of any available lims system for beads ?
---
mina using the Illumina plug-in package,
> http://baseplugins.thep.lu.se/wiki/net.sf.basedb.illumina. Illumina is
> bead-based and maybe a similar package can be created for Luminex? So,
> BASE supports bead based data but luminex is currently not directly
> supported.
>
>
&
Hello,
I have upgrade from 2.7.0 to 2.8.2. Only the root login is allowed to
connect. The rest of the users get a permission denied. I have tried to
change the password to those users but they can't login anymore ??
Any idea what's wrong ??
-
.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
at
org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)
at java.lang.Thread.run(Unknown Source)
Any idea what's wrong
2008/9/25 Nicklas Nordborg <[EMAIL PROTECTED]>
> david vilanova wrote:
>
Yes it makes sense. However i can't see any encrypted password option in the
login window (see attached shot) ???
2008/9/29 Nicklas Nordborg <[EMAIL PROTECTED]>
>
>
> > I think i'm done for a new install. Even if i create new users they can't
> > log in ???
>
> Have you tried unchecking the "E
n't work if you use an external authentication
> method.
> When I turn on the POP3Authenticator I get the same login window as in your
> screenshot.
>
> - Paulo
>
> On Monday 29 September 2008 13:59, david vilanova wrote:
> > Yes it makes sense. However i can't see
H,
While trying to uypdate to 2.12.1 i got the following errors.
Current schema version=65
I might help that i didn't apply the utf8 fiw when i moved from 2.8.2 to
2.9.1. I realized that when tryning to upgrade to 2.12.1. So before
upgrading i have applied the utf8 fix that has converted the encod
22 matches
Mail list logo
