Re: [base] (no subject)

2006-06-21 Thread Nicklas Nordborg
David Waring wrote: > I have installed Base2 with PostgreSQL and am in the process of testing > things out. I have been able to add reporters, plates, arrays, extracts > hybridizations raw data and experiments. I am trying to analyse an > experiment so I chose new bioassay set, chose the formula

[base] mage-ml export gives org.xml.sax.SAXParseException

2006-06-21 Thread mark alston (IFR)
Title: mage-ml export gives org.xml.sax.SAXParseException Hi everyone, The base-users forum seems to be down so I’ll have to put my question here – sorry if it has already been dealt with. I’m trying to get mage-ml export working. I updated my mysql-connector to 3.1.13-bin.jar, put it into

Re: [base] mage-ml export gives org.xml.sax.SAXParseException

2006-06-21 Thread Kjell Petersen
Hi Mark, You probably have a & sign somewhere in your text that is exported. That is confusing the XML parser, since the & means something special in XML... The missing identifier of MAGE-ML is something that I thought was fixed some time ago, and definitely is fixed in the CVS, which version a

Re: [base] mage-ml export gives org.xml.sax.SAXParseException

2006-06-21 Thread mark alston (IFR)
Hi Kjell, I should have said that I'm using BASE 1.2.15 - is that the problem? Regards, Mark -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Kjell Petersen Sent: 21 June 2006 11:57 To: BASE ML Subject: Re: [base] mage-ml export gives org.xml.sax.SAXParseE

Re: [base] mage-ml export gives org.xml.sax.SAXParseException

2006-06-21 Thread Kjell Petersen
Hi Mark, The & sign issue is not related to version. Some special characters are XML sensitive, and needs to be escaped to be able to be exported in XML. BASE do not check for this for every text string today, you need to track it down in your outputted XML files, and from the context find out