Re: [base] Illumina BGX reporter importer issue

2011-02-11 Thread Nicklas Nordborg
On 2011-02-10 21:00, Thomas Person wrote: > Howdy all, > > I have a fresh brand new a brand new installation of Base 2.16.1, on > MySQL 5.1.41, on Ubuntu 10.04.1, with Tomcat 6.0.24, and 1.6 of the > illumina plugin installed. When attempting to import the BGX file it > fails with error could not e

Re: [base] Illumina BGX reporter importer issue

2011-02-11 Thread Thomas Person
Thanks! That was it. What happened was I copied those xml files to $CATALINA_HOME/webapps/www/... rather than the base install dir. I'm thinking what I was thinking is that once I had the Base2 website up, it was “installed” under tomcat, not connecting the fact that I had to go to the origina

[base] Illumina Bead Summary importer

2011-02-11 Thread Thomas Person
Howdy all, I'm still having issues with the Illumina Plug in, When running the job the summary window gives: Bead Summary importer Executing: New raw bioassay -parsed 93094 lines in 2 files Preparing database for import... Then eventually crashes with OutOfMemoryErrror: Java heap space. I'v