[Bioc-devel] heavy vignette

2013-07-23 Thread Hernandez Ferrer, Carles
Hello to everyone, Related to vignettes creation. I'm developing an R-package to preprocess raw Affymetrix data for two other packages (MAD and inveRsion). The idea is to publish it in Bioconductor so an executable vignette must be done but to test the package functionality I need ~30 CEL

Re: [Bioc-devel] A case for specific markup (was BiocStyle for styling ...)

2013-07-23 Thread Kasper Daniel Hansen
Gabriel, I can see some usefulness along the lines you are mentioning (like automatic checking for typos), but it might come at a substantial (in my opinion) mental cost for the vignette writer. To some extent typos are detected in actual runnable code chunks since they are actually being run.

Re: [Bioc-devel] heavy vignette

2013-07-23 Thread Marc Carlson
Hi Carles, In general there are three steps to consider in turn: 1) Look at the repository of experiment data packages. If there are existing packages there with data that you can use then you probably want to use those. 2) Look for ways to make the data smaller and still get your