Re: [Bioc-devel] Missed change in S4Vectors

2015-08-10 Thread Hervé Pagès
Hi Peter, Starting with S4Vectors 0.7.12, labeledLine() belongs to S4Vectors so using the triple colon should not be necessary (and doing so will actually trigger a note from R CMD check). Can you provide more details on why you need this? Thanks, H. On 08/09/2015 09:16 PM, Peter Hickey

Re: [Bioc-devel] Missed change in S4Vectors

2015-08-10 Thread Peter Hickey
Hi Hervé, Hmm, sorry I may have misdiagnosed my problem. I was having problems with some code in the bsseq vignette. The following demonstrates what was happening: suppressPackageStartupMessages(library(bsseq)) Warning message: In .recacheSubclasses(def@className, def, doSubclasses, env)

Re: [Bioc-devel] Missed change in S4Vectors

2015-08-10 Thread Peter Hickey
Sorry, that should say once I made the proposed change to S4Vectors, not IRanges. On Tue, 11 Aug 2015 8:51 am Peter Hickey peter.hic...@gmail.com wrote: Hi Hervé, Hmm, sorry I may have misdiagnosed my problem. I was having problems with some code in the bsseq vignette. The following