[Bioc-devel] Packge Build Status Notifications Missing

Hi everyone, I'm not getting notifications at all when the build status of the package I am maintaining changes ( http://bioconductor.org/packages/devel/bioc/html/GenomicInteractions.html in this case, which broke due to changes in data.table), they are only going to my co-maintainer. I've

Re: [Bioc-devel] Packge Build Status Notifications Missing

- Original Message - > From: "Malcolm Perry" > To: bioc-devel@r-project.org > Sent: Wednesday, September 23, 2015 4:16:34 AM > Subject: [Bioc-devel] Packge Build Status Notifications Missing > > Hi everyone, > > I'm not getting notifications at all when the build

Re: [Bioc-devel] Packge Build Status Notifications Missing

- Original Message - > From: "Malcolm Perry" > To: "Dan Tenenbaum" > Cc: bioc-devel@r-project.org > Sent: Wednesday, September 23, 2015 8:33:25 AM > Subject: Re: [Bioc-devel] Packge Build Status Notifications Missing > > > My error with

Re: [Bioc-devel] Packge Build Status Notifications Missing

My error with the link Dan - I am talking about the release builds. On Wed, Sep 23, 2015 at 4:26 PM, Dan Tenenbaum wrote: > > > - Original Message - > > From: "Malcolm Perry" > > To: bioc-devel@r-project.org > > Sent: Wednesday, September

[Bioc-devel] KEGG REST issue

Dear BioC team, I noticed some problem with keggLink() function of KEGGREST package, and it can be traced back to KEGG REST API Linked entries. Some of this API function is broken. For example, the following line used to get all gene-pathway mapping for human, but retrieves nothing now.

Re: [Bioc-devel] KEGG REST issue

Hi Weijun, - Original Message - > From: "Luo Weijun" > To: maintai...@bioconductor.org, dtene...@fredhutch.org > Cc: "Martin Morgan" , Bioc-devel@r-project.org > Sent: Wednesday, September 23, 2015 9:44:13 AM > Subject: KEGG REST issue > >

Re: [Bioc-devel] rgl on windows build servers

- Original Message - > From: "Kasper Daniel Hansen" > To: bioc-devel@r-project.org > Sent: Wednesday, September 23, 2015 10:57:59 AM > Subject: [Bioc-devel] rgl on windows build servers > > It seems that rgl is not currently installed on the Windows build

[Bioc-devel] rgl on windows build servers

It seems that rgl is not currently installed on the Windows build servers. Is that because it is "difficult" (i.e. requires external packages) or just an oversight? Best, Kasper [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org

Re: [Bioc-devel] rgl on windows build servers

Thanks. So I will not assume that regular users on Windows might have problems with installing rgl. I don't want to indirectly depend on a package which causes grief on Windows for this particular package (I get rgl from depending on mixOmics). Best, Kasper On Wed, Sep 23, 2015 at 2:04 PM,

Re: [Bioc-devel] Txdb Issues - all exon names are NA's ?

Works for me. Marc On Tue, Sep 22, 2015 at 6:03 PM, Hervé Pagès wrote: > Hi Marc, > > On 09/22/2015 05:39 PM, Marc Carlson wrote: > >> Herve is right. UCSC doesn't give us this information, And actually, I >> think it's pretty rare to see exon names from anybody. So

Re: [Bioc-devel] Issues with R CMD check and an ExperimentalData package

Hi Christian, Dan, thank you for reporting your issues with using BiocStyle. I didn't experience such problems before, I use "`r pkg_ver('EBImage')`" in my package vignette and both R CMD build and R CMD check pass without errors, without the need of prepending 'BiocStyle::' to the the pkg_ver.