Re: [Bioc-devel] Stackoverflow Bounty: pkgdown R package build_site function causes dependent packages unable to be loaded

2016-12-15 Thread Hervé Pagès
Hi Marcin, You posted this 7 months ago, it has been viewed 100 times, and nobody commented or tried to answer. I don't know if a bounty is going to help though. To me, a much more effective way to get people help you is by providing enough information so that people can easily reproduce the

Re: [Bioc-devel] .git folders in the repository

2016-12-15 Thread 王棣台
Hi, I am the author of the package 'anamiR'. It might be a mistake I made when I was learning how to use git-SVN. I think I have corrected it. Many thanks, Ti-Tai Wang 從: Bioc-devel [bioc-devel-boun...@r-project.org] 代表 Wolfgang Huber

[Bioc-devel] Stackoverflow Bounty: pkgdown R package build_site function causes dependent packages unable to be loaded

2016-12-15 Thread Marcin Kosiński
I am trying to build a pkgdown documentation for Bioconductor package. I have wrote about it on the stackoverflow http://stackoverflow.com/questions/36874972/pkgdown-r-package-build-site-function-causes-dependent-packages-unable-to-be-loa but the question didn't receivew the expected attention. I

Re: [Bioc-devel] Quick question about result of R CMD check and R CMD BiocCheck

2016-12-15 Thread Shepherd, Lori
$error [1] "At least 80% of man pages documenting exported objects must have runnable examples. The following pages do not:" This ERROR occurs when man pages are included without runnable examples. You have examples in it looks like 5/12 of your man pages (~42%). We encourage 80% $warning [1]

[Bioc-devel] Quick question about result of R CMD check and R CMD BiocCheck

2016-12-15 Thread Jurat Shayidin
Dear BiocDevel : I got confused about the message from R CMD BiocCheck, and R CMD check on my packages. Precisely speaking, R CMD check throws an error that my unit test is failed, zero warning, 2 notes; instead R CMD BiocCheck complain with one error that no runnable example found, one warning

[Bioc-devel] .git folders in the repository

2016-12-15 Thread Wolfgang Huber
Today I get, after “svn up" whuber@boltzmann:~/madman/Rpacks$ find . -name .git -exec du -sh {} \; 17M./anamiR/anamiR/.git 56K./RareVariantVis/.git Probably the “.git" folders should not be checked in? Best wishes Wolfgang ___