On 5/19/17 12:15 PM, Michael Lawrence wrote:
That could work, also.
On Fri, May 19, 2017 at 10:27 AM, Martin Morgan
wrote:
On 05/19/2017 12:14 PM, Michael Lawrence wrote:
Since SeqArray already imports SummarizedExperiment and
VariantAnnotation, why can't it
That could work, also.
On Fri, May 19, 2017 at 10:27 AM, Martin Morgan
wrote:
> On 05/19/2017 12:14 PM, Michael Lawrence wrote:
>>
>> Since SeqArray already imports SummarizedExperiment and
>> VariantAnnotation, why can't it just move them to Depends and use
>>
Hi Roel,
It looks like Michael fixed rtracklayer yesterday and that
MutationalPatterns 1.2.1 could finally propagate:
http://bioconductor.org/checkResults/release/bioc-LATEST/MutationalPatterns/malbec2-buildsrc.html
The landing page should get updated soon:
On 05/19/2017 12:14 PM, Michael Lawrence wrote:
Since SeqArray already imports SummarizedExperiment and
VariantAnnotation, why can't it just move them to Depends and use
their generics?
do they need to be moved to Depends? Or simply import the generic export
the new method(s) (and generic)?
Since SeqArray already imports SummarizedExperiment and
VariantAnnotation, why can't it just move them to Depends and use
their generics?
On Fri, May 19, 2017 at 8:39 AM, Stephanie M. Gogarten
wrote:
> Dear Core Team,
>
> What do you think about adding the following
On 19 May 2017 15:39, Stephanie M. Gogarten wrote:
> Dear Core Team,
>
> What do you think about adding the following generics to BiocGenerics?
>
> colData
> rowRanges
> ref
> alt
> qual
Currently exists in MSnbase with signature
setGeneric("qual", function(object) standardGeneric("qual"))
Dear Core Team,
What do you think about adding the following generics to BiocGenerics?
colData
rowRanges
ref
alt
qual
filt
header
fixed
info
geno
They are currently defined by both
VariantAnnotation/SummarizedExperiment and SeqArray. Given the
increasingly widespread use of VCF files, it
Dear Valerie,
Could we maybe do a manual build for the package, so that the bugfixed version
can be propagated to users?
Kind regards,
Roel Janssen
From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Janssen-10,
R.R.E.