Re: [Bioc-devel] Update of miRBaseVersions.db annotation package

I'd be happy to update your annotation package. The package, however, appears to have multiple warnings and errors occurring on check and BiocCheck. There appear to be some documentation issues and a test failure in check. For BiocCheck, just be sure the BiocViews you are using are from one

[Bioc-devel] Permission denied to Bioconductor repository

Hi, I'm the TarSeqQC package maintainer. I'have recently sent my new public key through the google form, I have received an e-mail confirming that my new key was added but I can't access the Bioconductor repository. git clone g...@git.bioconductor.org:packages/TarSeqQC Cloning into

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On 04/06/2018 10:44 AM, Lluís Revilla wrote: I have recently faced a similar warning. This is when a link to a help page of another package is broken (there is not such help page). Although those could be false positives: mclapply help page does exists in parallel package. as.MAList does

[Bioc-devel] Bioc 3.7 build failed for GenvisR package

Hi All, I've noticed GenVisR is failing to build the vignette on windows for bioc-devel. the error seems to be: "Invalid Parameter - /figure-html" This seems like it may be related to the use of BiocStyle given this post on stackoverflow:

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear Lluis and Vincent, Thanks for confirming this in other packages. In the two examples shown, these must be false positives, as the links exist. But also the fact that the warnings only appear in Windows suggests a false positive: I do not understand how this warning would not be triggered in

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

I have recently faced a similar warning. This is when a link to a help page of another package is broken (there is not such help page). Although those could be false positives: mclapply help page does exists in parallel package. as.MAList does exists in devel limma HTH On 6 April 2018 at 16:35,

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

ive seen this too apropos bigrquery on windows On Fri, Apr 6, 2018 at 10:22 AM Ramon Diaz-Uriarte wrote: > > Dear All, > > Two packages I maintain are showing, in Windows, a warning during check > with messages like > > Rd warning: >

[Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear All, Two packages I maintain are showing, in Windows, a warning during check with messages like Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp21WlQD/R.INSTALL23343f935731/OncoSimulR/man/oncoSimulIndiv.Rd:570: file link 'mclapply' in package 'parallel' does not exist and so has