Re: [Bioc-devel] No curatedMetagenomicData build triggered

2018-11-03 Thread Obenchain, Valerie
Hi Levi, We've had one experimental data build since the release, posted on Nov 1. Data experiment packages build on Tues, Thurs and Sun. Release should continue to follow this schedule. The devel builds are taking a very long time to complete and overlapping each other which means less

Re: [Bioc-devel] choosing R version dependency for existing packages

2018-11-03 Thread Henrik Bengtsson
I'm using Depends: R (>= 2.12.0) to communicate that I've tested/verified that the package works as far back as R 2.12.0. Also, since R (>= 3.5.1) and R (>= 3.5.0) has been mentioned here, in 'Writing R Extensions' there is: "It is inadvisable to use a dependence on R with patchlevel (the

Re: [Bioc-devel] choosing R version dependency for existing packages

2018-11-03 Thread Paul Shannon
Thanks, Martin. I have backed off MotifDB’s R requirement to 3.5.0. I will experiment with removing the requirement entirely in the new devel branch. - Paul > On Nov 3, 2018, at 1:37 AM, Martin Morgan wrote: > > If users are 'playing by the books' and using BiocManager::install(), the >

Re: [Bioc-devel] No curatedMetagenomicData build triggered

2018-11-03 Thread Levi Waldron
I remember now (I think) that experimental data packages are built on Wednesday and *Saturday* nights - in which case I’ll just check again tomorrow morning. On Sat, Nov 3, 2018 at 8:59 AM Levi Waldron wrote: > curatedMetagenomicData hasn't built yet on the new release or devel. I > believe

[Bioc-devel] No curatedMetagenomicData build triggered

2018-11-03 Thread Levi Waldron
curatedMetagenomicData hasn't built yet on the new release or devel. I believe this was originally because the required ExperimentHub database update occurred after the last curatedMetagenomicData version bump, but since I bumped the version on Thursday it still hasn't built. Can you advise?

Re: [Bioc-devel] choosing R version dependency for existing packages

2018-11-03 Thread Martin Morgan
If users are 'playing by the books' and using BiocManager::install(), the version of R is coupled with the version of Bioconductor / your package, so specifying an R version is irrelevant. In addition, saying your package has a dependency R >=... implies that there will be no breaking changes