Re: [Bioc-devel] rtracklayer::import.bed(genome = Seqinfo)

2019-10-23 Thread Michael Lawrence via Bioc-devel
Hi Aditya, This is probably best asked on the support site. When you post there, please include your sessionInfo(). Thanks, Michael On Tue, Oct 22, 2019 at 9:50 AM Bhagwat, Aditya wrote: > > Dear Michael, > > Sorry for my incomplete email - the send button got hit too fast. Better this >

Re: [Bioc-devel] ndexr fails on vignette build on windows

2019-10-23 Thread Vincent Carey
May I ask what is the resolution here? I have updated curl and httr on my windows box and continue to see errors unique to windows when requests lack the protocol in the URL. On Wed, Oct 23, 2019 at 7:28 AM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Thank you for the update. > > >

Re: [Bioc-devel] pwrEWAS package: Error in CHECK during checkResults on Windows

2019-10-23 Thread Pages, Herve
Hi Stefan, It looks like a connectivity issue, likely a transient one. I would just wait and see if it goes away in the next days. Thanks for keeping a close eye on the build results for your package. Best, H. On 10/23/19 11:20, Graw, Stefan H wrote: > Dear devel team, > > My package

[Bioc-devel] pwrEWAS package: Error in CHECK during checkResults on Windows

2019-10-23 Thread Graw, Stefan H
Dear devel team, My package "pwrEWAS" produced an error (see below) during checkResults in CHECK on the windows server. I previously had an OK and did not change anything. Should I just wait for the next build or how can I fix this issue? Thanks, Stefan ** running examples for arch 'x64'

Re: [Bioc-devel] HDF5Array/DelayedArray matrix operations fail on windows

2019-10-23 Thread Pages, Herve
Hi Kevin, Running this particular code (e.g. the code in the test-sparsematrix.R file) also works for me on our Windows builders. However, trying to run the **full suite** of tests does trigger the error. So it seems to be a situation where some code in some other tests is altering the state

Re: [Bioc-devel] ndexr fails on vignette build on windows

2019-10-23 Thread Shepherd, Lori
Thank you for the update. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Florian J. Auer Sent: Wednesday, October 23, 2019 7:25

Re: [Bioc-devel] ndexr fails on vignette build on windows

2019-10-23 Thread Florian J. Auer
Hi Lori, Thanks a lot, that really helped! It seems, that the error is caused by httr, and curl in the end. https://github.com/r-lib/httr/issues/619 Greetings Florian Am 09.10.19 um 17:37 schrieb Shepherd, Lori: > I did a little digging and here is what I've found...� > > > I R CMD

[Bioc-devel] Bioc 3.10 Feature Freeze

2019-10-23 Thread Shepherd, Lori
Developers, The release of Bioconductor 3.10 is one week out. Today marks the 'feature freeze' of 3.10 where we ask that all commits are limited to bug fixes and documentation (no more API changes). Thanks you for your cooperation. Lori Shepherd Bioconductor Core Team Roswell Park