Re: [Bioc-devel] Reducing dependencies

2020-06-02 Thread Henrik Bengtsson
RStudio provides pre-built R package for Linux and since a some weeks now, they can be used on GitHub Actions (https://github.com/r-lib/actions). In addition, the run-time limit on GitHub Actions is several hours compared to the 50 minutes you've' got on Travis, so even if you install from

[Bioc-devel] Reducing dependencies

2020-06-02 Thread Koen Van den Berge
Dear All, We have recently extended our Bioconductor package tradeSeq to allow different input formats and accommodate extended downstream analyses, by building on other R/Bioconductor packages. However this has resulted in a

Re: [Bioc-devel] git push permission denied

2020-06-02 Thread Nitesh Turaga
Hi, This is because you don’t have access to FRASER package. Only Ines Scheller seems to have access to it. I’ve made the change and you should have access to it now. Best, Nitesh > On Jun 2, 2020, at 12:34 AM, Christian Mertes wrote: > > Dear Bioc team, > > I tried to push an update

[Bioc-devel] Updated annotation packages

2020-06-02 Thread Interdonato, Kayla
There is an updated version (3.11.4) of GO.db and the org packages available. This new version of GO.db utilizes the new OBO file format we have been working on. There are some really big changes in this version of GO.db that we wanted the community to be aware of. The GO Consortium has made