Hi Robert,
Yes seqlevelsStyle's new behavior is slightly different and less
forgiving. The thing is that it will generally reveal dormant issues
which is not such a bad thing after all.
Note that it doesn't seem completely straightforward to retrieve the
reference genome/assembly directly
My view of shiny applications is that they should provide a graphical interface
to sequences of commands that can be run at the command line. As such, the
commands themselves should be part of a standard R package, with appropriate
examples, tests, and documentation, including a vignette
hi Hervé,
thank you very much for your clarifications, but this behavior is
different in release and has been different until now, this is BioC 3.11:
library(VariantAnnotation)
fl <- system.file("extdata", "chr22.vcf.gz", package="VariantAnnotation")
vcf <- readVcf(fl, "hg19")
seqlevels(vcf)
Hi all,
I have recently developed a shinyApp useful for DNA methylation analysis. I
would like to upload it to Bioconductor.
I have executed BiocCheck and I have an error that I don't know how to
resolve. "At least 80% of man pages documenting exported objects must have
runnable examples."
My
