bfcquery() just searches the cache, so if you've created two resources that
match the name then you end up with two rids
> xx = bfcnew(bfc, "foo")
> bfcquery(bfc, "foo", "rname")
# A tibble: 1 x 10
rid rname create_time access_time rpath rtype fpath last_modified_t… etag
I'm not a BiocFileCache expert, sorry. You will probably get better help
by opening a BiocFileCache issue on GitHub.
Cheers,
H.
On 9/11/20 12:00, Shraddha Pai wrote:
> Hi Herve,
> Sorry - hit shortcut to "send" by mistake.
>
> This is the code snippet that got cut off:
> if (length(rid)>1) {
Hi Shraddha,
Seems to be a BiocFileCache issue.
On my laptop the following code (taken from your
Predict_CaseControl_from_CNV.Rnw vignette):
require(BiocFileCache)
geneURL <- paste("http://download.baderlab.org/netDx/;,
"supporting_data/refGene.hg18.bed",sep="")
cache <-
At the top of each build report page, e.g.,
http://bioconductor.org/checkResults/3.12/bioc-LATEST/netDx/malbec1-buildsrc.html
there's a link with title 'following settings' describing
build-system-specific settings. Does this help to reproduce the problem?
Martin
On 9/11/20, 11:52 AM,
Hello BioC-devel team,
Any idea why netDx 1.1.4 fails on the bioc devel build system?
This is the error:
--- re-building 'Predict_CaseControl_from_CNV.Rmd' using knitr
Quitting from lines 173-195 (Predict_CaseControl_from_CNV.Rmd)
Error: processing vignette 'Predict_CaseControl_from_CNV.Rmd'
