Hi,
I don't see that you have aliases for these symbols, hence the warning:
hpages@spectre:~/cyanoFilter/man$ grep 'alias{PhytoFilter}' *.Rd
hpages@spectre:~/cyanoFilter/man$ grep 'alias{clusterExtract}' *.Rd
etc...
Note that even though you have aliases for some PhytoFilter **methods**:
Thanks for bringing this to our attention.
The script that we use to compute the stats had problems accessing the
latest CloudFront log files on S3, resulting in package downloads from
the last few days being ignored. This is now repaired and hopefully the
stats will get updated tomorrow
Thanks Lori.
I rsa key had changed in my system.
Best wishes.
*Stefano *
Stefano Mangiola | Postdoctoral fellow
Papenfuss Laboratory
The Walter Eliza Hall Institute of Medical Research
+61 (0)466452544
Il giorno mer 10 mar 2021 alle ore 23:49 Kern, Lori <
lori.sheph...@roswellpark.org>
Dear BioC team,
download stats for BioC packages don’t seem to be updated. The graphs were
generated on 03-09, but the stats are much lower than expected for 9 days:
https://bioconductor.org/packages/stats/bioc/SBGNview/
https://bioconductor.org/packages/stats/bioc/pathview/
No worries at all, and thank you for following up.
Laurent
From: Bioc-devel on behalf of Marcel Ramos
Sent: 10 March 2021 18:39
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] bioconductor_docker:devel missing MAE and
GenomeInfoDb
Hi Laurent,
Hi Laurent,
This is a side-effect of the improvements to / migration of the build
system (thanks Hervé!).
Any packages that were not building would be marked with that error because
the last-propagated version of the package would not be available.
I have updated MultiAssayExperiment to build
Thank you Robert and Nitesh for your input.
The workshops at EuroBioc were using devel (as far as I can remember at least)
which is why I am using bioconductor_docker:devel. For now, I will (try to)
install these two packages from github.
Best wishes,
Laurent
hi,
a possible workaround is to install directly from the repo using the
syntax "Bioconductor/pkgname" in the call to 'BiocManager::install()'.
this just worked in my current devel container:
BiocManager::install("Bioconductor/GenomeInfoDb")
while attempting to
Hi Laurent,
Since you are using the devel version of `bioconductor_docker` it's possible
that the packages failed to build on the build system.
For example,
http://bioconductor.org/checkResults/devel/bioc-LATEST/MultiAssayExperiment/ ,
MultiAsssayExperiment failed to build on devel. A better
You'll likely need to add keys to your account.
https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/
If this is your first time accessing the BiocCredentials app you will have to
activate the account first:
https://git.bioconductor.org/BiocCredentials/account_activation/
Hello,
for some reason I cannot connect to Bioconductor upstream. I remember
reading something has changed. Could you please point me in the right
direction?
git fetch --all
Fetching origin
Fetching upstream
Permission denied (publickey).
fatal: Could not read from remote repository.
Please
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