Re: [Bioc-devel] [External] Re: updating package on the development version

2020-06-20 Thread Dwivedi, Bhakti
From: Shepherd, Lori Sent: Friday, June 19, 2020 7:00 AM To: Dwivedi, Bhakti ; bioc-devel@r-project.org Subject: [External] Re: updating package on the development version This message was sent securely using Z

Re: [Bioc-devel] [External] Re: updating package on the development version

2020-06-19 Thread Dwivedi, Bhakti
rk/Versions/4.0/Resources/library/00LOCK-GISPA/00new/GISPA/doc/index.html': No such file or directory Error in file(con, "w") : cannot open the connection Regards, Bhakti From: Shepherd, Lori Sent: Friday, June 19, 2020 7:00 AM To: Dwivedi, Bha

[Bioc-devel] updating package on the development version

2020-06-18 Thread Dwivedi, Bhakti
Hi, I am trying to update previous release of my package (GISPA) on the development version. I pushed the changes and new release GISPA 1.13.1 following https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ But, I do not see the change on the bioconductor development versi

[Bioc-devel] parallel processing in R?

2017-12-11 Thread Dwivedi, Bhakti
Hi, Is there a way to parallelize ConsensusClusterPlus package? https://bioconductor.org/packages/release/bioc/html/ConsensusClusterPlus.html We are developing a R shiny tool that performs consensus clustering in addition to other genome-wide analyses. The consensus clustering step is taking

[Bioc-devel] question on bioconductor/package citation

2017-03-04 Thread Dwivedi, Bhakti
Hi, I have a few general questions. With such a rigorous peer-review process in place for new package submissions in Bioconductor, I was wondering if there is a way to assess the package acceptance rate? The reason I asked, I want to include the Bioconductor package citation in my NIH bio-

Re: [Bioc-devel] biconductor build error and warning

2016-12-09 Thread Dwivedi, Bhakti
Hi, What's the expected time-frame for the Bioconductor package review? Thank you. Regards, Bhakti From: Dwivedi, Bhakti Sent: Sunday, December 04, 2016 7:38 PM To: Dan Tenenbaum Cc: bioc-devel Subject: Re: [Bioc-devel] biconductor build error and warning Thank you so muc

Re: [Bioc-devel] biconductor build error and warning

2016-12-05 Thread Dwivedi, Bhakti
This helps, Thank you so much! From: Herv� Pag�s Sent: Monday, December 5, 2016 9:16:15 PM To: Dwivedi, Bhakti Cc: bioc-devel Subject: Re: [Bioc-devel] biconductor build error and warning Hi Bhakti, Please see my post from October here https://stat.ethz.ch

Re: [Bioc-devel] biconductor build error and warning

2016-12-04 Thread Dwivedi, Bhakti
Thank you so much Dan!! From: Dan Tenenbaum Sent: Sunday, December 4, 2016 1:41:59 PM To: Dwivedi, Bhakti Cc: bioc-devel Subject: Re: [Bioc-devel] biconductor build error and warning - Original Message - > From: "Bhakti Dwivedi" >

[Bioc-devel] biconductor build error and warning

2016-12-04 Thread Dwivedi, Bhakti
Could anyone please help me with the below two bioconductor build error and warnings? I am getting the below ERROR Bioconductor build msg on Mac OS X (https://github.com/Bioconductor/Contributions/issues/202) installing the package to build vignettes ERROR: dependency HH is not available for