Re: [Bioc-devel] rifiComparative

Hi Loubna, Was the error in release or the devel version? Devel version report: http://bioconductor.org/checkResults/3.18/bioc-LATEST/rifiComparative/ Release version report: http://bioconductor.org/checkResults/release/bioc-LATEST/rifiComparative/ Perhaps, your push was to the devel version

Re: [Bioc-devel] Fixing autonomics - ssh: connect to host git.bioconductor.org port 22: Connection timed out

Hi Aditya, Can you check if this is due to the recent branch name changes: default branch name changed from 'main' to 'devel' This was announced on the mailing-list, and also on this blogpost: https://bioconductor.github.io/biocblog/posts/2023-03-01-transition-to-devel/ Sarvesh On Tue, 4 Apr

[Bioc-devel] "Graphics API version mismatch": Devel package check on macOS failing

Hi, I see some devel packages (including my package seqArchRplus ) failing on macOS due to "Graphics API version mismatch". The R-devel announcement here

Re: [Bioc-devel] download stats not accessible

While I too wondered why the OP mentions unavailability "for months", now re-reading the OP's email, may be they meant "for months" granularity which is (now temporarily un)available! :D Cheers, Sarvesh On Mon, 20 Mar 2023 at 16:50, Hervé Pagès wrote: > Not for months, only since last week.

[Bioc-devel] seqArchRplus build error on Linux

Hi Bioc-team, I get this build error for my package seqArchRplus on Linux/nebbiolo1. --- re-building ‘seqArchRplus.Rmd’ using rmarkdown Error running filter pandoc-citeproc: Could not find executable pandoc-citeproc Error: processing vignette 'seqArchRplus.Rmd' failed with diagnostics: pandoc

Re: [Bioc-devel] seqArchR error on build systems

so it won't be reflected on tomorrow's report. But > it should be reflected on Thursday's report. > > We'll do the same on the other build machines soon. > > Best, > > H. > > On 25/10/2022 08:53, Sarvesh Nikumbh wrote: > > Hi Bioc-team, > > > > seqAr

Re: [Bioc-devel] Package dependencies error during BiocCheck

now, you can disable it by running: > > BiocCheck("./seqArchRplus", `no-check-dependencies` = TRUE) > > Best, > > Marcel > > > On 10/25/22 12:27 PM, Sarvesh Nikumbh wrote: > > Hi all, > > > > I am trying to resolve an issue with dependencies

[Bioc-devel] Package dependencies error during BiocCheck

Hi all, I am trying to resolve an issue with dependencies of my package which is under review at the moment (Issue 2790 , latest report ). I was wondering

[Bioc-devel] seqArchR error on build systems

Hi Bioc-team, seqArchR was building fine, without any errors last week, but I am seeing an error again. This time it is due to the Python module 'sklearn' not available and one another error. The sklearn-related error occurs on nebbiolo2 and Iconway, while palomino4 shows a different error.

Re: [Bioc-devel] Remote rejected when pushing to git

Hi Ash, Refer to Lori's email from Oct 17 apprising of the freezing of the RELEASE_3_15 branch according to the release schedule at https://bioconductor.org/developers/release-schedule/ As the email says, you can now only push to the master branch (devel as of today, release candidate 3.16), and

Re: [Bioc-devel] Increase version of system dependency?

> *From:* Bioc-devel on behalf of > Sarvesh Nikumbh > *Sent:* Thursday, October 20, 2022 12:08 PM > *To:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] Increase version of system dependency? > > ***ATTENTION: This email came from an external source. Do not open &g

Re: [Bioc-devel] Increase version of system dependency?

> does, via the inst/python/perform_nmf.py script), then you need to list > the module in your SystemRequirements. > > Then we'll make sure to install the module on all the builders. > > Thanks, > > H. > > > On 18/10/2022 09:31, Sarvesh Nikumbh wrote: > > Hi bioc

Re: [Bioc-devel] Increase version of system dependency?

t/python/perform_nmf.py script), then you need to list > the module in your SystemRequirements. > > Then we'll make sure to install the module on all the builders. > > Thanks, > > H. > > > On 18/10/2022 09:31, Sarvesh Nikumbh wrote: > > Hi bioc team, > > &g

Re: [Bioc-devel] Increase version of system dependency?

ance; see BiocSklearn for an > example; I am sure there are > others. > > On Tue, Oct 18, 2022 at 12:31 PM Sarvesh Nikumbh < > sarvesh.niku...@gmail.com> wrote: > >> Hi bioc team, >> >> My package seqArchR though does not error in any way, but can spit out

[Bioc-devel] Increase version of system dependency?

Hi bioc team, My package seqArchR though does not error in any way, but can spit out numerous warnings (originally from Python/scikit-learn which is a dependency) depending on the version of scikit-learn available. This fills the output to the extent that it is unreadable. The cause for this is