Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

f of Joris Meys <joris.m...@ugent.be<mailto:joris.m...@ugent.be>> Sent: Thursday, April 26, 2018 4:30:08 AM To: Rahmatallah, Yasir Cc: bioc-devel Subject: Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist " On Wed, Apr 25, 20

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Yasir Cc: bioc-devel Subject: Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist " On Wed, Apr 25, 2018 at 11:52 PM, Rahmatallah, Yasir <yrahmatal...@uams.edu> wrote: > Dear all, > > Build report show that many packages still ha

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On Wed, Apr 25, 2018 at 11:52 PM, Rahmatallah, Yasir wrote: > Dear all, > > Build report show that many packages still have check warnings due to > missing file links (cross referencing pages from other packages) under > windows. The issue happens because there are

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

, Little Rock, AR 72205 -Original Message- From: Bioc-devel [mailto:bioc-devel-boun...@r-project.org] On Behalf Of Vincent Carey Sent: Wednesday, April 18, 2018 2:14 PM To: Martin Morgan Cc: bioc-devel; ramon.d...@iib.uam.es Subject: Re: [Bioc-devel] BioC 3.7 Windows check warning "file

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On Wed, 18-April-2018, at 21:09:32, Martin Morgan wrote: > On 04/18/2018 02:45 PM, Vincent Carey wrote: >> >> >> On Mon, Apr 9, 2018 at 11:23 AM, Martin Morgan >> > >> wrote: >> >> >> >>

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On 04/18/2018 02:45 PM, Vincent Carey wrote: On Mon, Apr 9, 2018 at 11:23 AM, Martin Morgan > wrote: On 04/09/2018 10:51 AM, Ramon Diaz-Uriarte wrote: Dear Martin, On Fri, 06-April-2018, at

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

yes, the [] is a habit i need to break. ok, we'll get by. On Wed, Apr 18, 2018 at 3:09 PM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > > > On 04/18/2018 02:45 PM, Vincent Carey wrote: > >> >> >> On Mon, Apr 9, 2018 at 11:23 AM, Martin Morgan < >> martin.mor...@roswellpark.org

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On Mon, Apr 9, 2018 at 11:23 AM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > > > On 04/09/2018 10:51 AM, Ramon Diaz-Uriarte wrote: > >> >> Dear Martin, >> >> On Fri, 06-April-2018, at 18:59:00, Martin Morgan < >> martin.mor...@roswellpark.org> wrote: >> >>> On 04/06/2018 10:44 AM,

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear Martin, On Mon, 09-April-2018, at 17:35:47, Martin Maechler wrote: >> Ramon Diaz-Uriarte >> on Mon, 9 Apr 2018 16:51:38 +0200 writes: > > > Dear Martin, > > > On Fri, 06-April-2018, at 18:59:00, Martin Morgan > >

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On 04/09/2018 10:51 AM, Ramon Diaz-Uriarte wrote: Dear Martin, On Fri, 06-April-2018, at 18:59:00, Martin Morgan wrote: On 04/06/2018 10:44 AM, Lluís Revilla wrote: I have recently faced a similar warning. This is when a link to a help page of another

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

> Ramon Diaz-Uriarte > on Mon, 9 Apr 2018 16:51:38 +0200 writes: > Dear Martin, > On Fri, 06-April-2018, at 18:59:00, Martin Morgan > wrote: >> On 04/06/2018 10:44 AM, Lluís Revilla wrote: >>> I have recently

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear Martin, On Fri, 06-April-2018, at 18:59:00, Martin Morgan wrote: > On 04/06/2018 10:44 AM, Lluís Revilla wrote: >> I have recently faced a similar warning. >> This is when a link to a help page of another package is broken (there is >> not such help page).

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

On 04/06/2018 10:44 AM, Lluís Revilla wrote: I have recently faced a similar warning. This is when a link to a help page of another package is broken (there is not such help page). Although those could be false positives: mclapply help page does exists in parallel package. as.MAList does

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear Lluis and Vincent, Thanks for confirming this in other packages. In the two examples shown, these must be false positives, as the links exist. But also the fact that the warnings only appear in Windows suggests a false positive: I do not understand how this warning would not be triggered in

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

I have recently faced a similar warning. This is when a link to a help page of another package is broken (there is not such help page). Although those could be false positives: mclapply help page does exists in parallel package. as.MAList does exists in devel limma HTH On 6 April 2018 at 16:35,

Re: [Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

ive seen this too apropos bigrquery on windows On Fri, Apr 6, 2018 at 10:22 AM Ramon Diaz-Uriarte wrote: > > Dear All, > > Two packages I maintain are showing, in Windows, a warning during check > with messages like > > Rd warning: >

[Bioc-devel] BioC 3.7 Windows check warning "file link zz in package yy does not exist "

Dear All, Two packages I maintain are showing, in Windows, a warning during check with messages like Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp21WlQD/R.INSTALL23343f935731/OncoSimulR/man/oncoSimulIndiv.Rd:570: file link 'mclapply' in package 'parallel' does not exist and so has