Re: [Bioc-devel] Convertion of DataFrame with XStringSets to data.frame

2014-05-02 Thread Hervé Pagès
Hi Julian, Michael, On 05/02/2014 04:58 AM, Michael Lawrence wrote: This looks like it is due to the changes to as.data.frame,List. XStringSet just needs a method that preserves the original behavior. Just added to Biostrings 2.33.6. Thanks for the catch! H. On Fri, May 2, 2014 at 1:54 AM

Re: [Bioc-devel] Convertion of DataFrame with XStringSets to data.frame

2014-05-02 Thread Michael Lawrence
This looks like it is due to the changes to as.data.frame,List. XStringSet just needs a method that preserves the original behavior. On Fri, May 2, 2014 at 1:54 AM, Julian Gehring wrote: > Hi, > > With the latest bioc-devel, the convertion of XStringSets within a > DataFrame to a data.frame beha

[Bioc-devel] Convertion of DataFrame with XStringSets to data.frame

2014-05-02 Thread Julian Gehring
Hi, With the latest bioc-devel, the convertion of XStringSets within a DataFrame to a data.frame behaves strangely: library(Biostrings) dss = DNAStringSet(c("ACT", "AAA")) DF = DataFrame(dss) as(DF, "data.frame") In the latest bioc-devel, this splits the strings: dss.group dss.gro