Re: [Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

Dear Martin, Lori, I’ve added support for the column “tx_name” (which will return the transcript ID) to all ensembldb methods so that’s fine now. Apparently I was just a little late, since that is now in the devel version 1.5.1. thanks, jo > On 03 May 2016, at 18:51, Martin Morgan

Re: [Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

On 05/02/2016 03:46 AM, Rainer Johannes wrote: Hi Herve, passing down additional arguments to the internal exonsBy, cdsBy, fiveUTRsByTranscript and threeUTRsByTranscript would do it! That would be great, thanks. Hi Johannes -- Lori (cc'd, a new team member) and I are working on this. The

Re: [Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

Hi Herve, passing down additional arguments to the internal exonsBy, cdsBy, fiveUTRsByTranscript and threeUTRsByTranscript would do it! That would be great, thanks. cheers, jo > On 02 May 2016, at 07:38, Hervé Pagès wrote: > > Hi Johannes, > > We can make

Re: [Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

Hi Johannes, We can make transcriptLengths() a generic but isn't the situation similar to the extractTranscriptSeqs() situation that you brought in January (https://stat.ethz.ch/pipermail/bioc-devel/2016-January/008570.html) for which adding the ellipsis to the argument list of the function

[Bioc-devel] Making transcriptLength function a method in GenomicFeatures?

Dear all, I was wondering, you think it would be possible to make the transcriptLength function in GenomicFeatures a method and export that? Reason is that I have also implemented a transcriptLength function (actually presently a method in order to allow that to be used for EnsDb and TxDb