Re: [Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

2019-04-28 Thread Leif Wigge
Dear Benjamin, Thanks for the pointers! I adopted your solution and it now passes the check on tokay2 as well! Thanks! All the best Leif On 2019-04-26, 15:51, "Benjamin Tremblay" wrote: Hi, I’ve actually had the exact same problem. The solution for me was to change \link[pkg:f

Re: [Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

2019-04-26 Thread Benjamin Tremblay
Hi, I’ve actually had the exact same problem. The solution for me was to change \link[pkg:foo]{bar} where foo is the actual .Rd filename in the original package. Downloading the limma source reveals there is an Rd file named 01Introduction.Rd, without the dot as you had it. So it would look lik

[Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

2019-04-26 Thread Leif Wigge
Dear all, I’ve had some trouble clearing the WARNING from R CMD check on tokay2 for my package piano (http://bioconductor.org/checkResults/3.9/bioc-LATEST/piano/tokay2-checksrc.html ). As an example, I get this warning: Rd warning in diffExp.Rd:75: “file link '01.Introduction' in package 'limma