Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-18 Thread Cuklina Jelena
Dear Lori, thanks, I’ve made the version bump and will be more careful in future to pull from bioc before introducing any updates. Best regards, Jelena Čuklina. On 17 Oct 2019, 17:21 +0200, Shepherd, Lori , wrote: I believe we have reset it. Please really look at the documentation

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-17 Thread Shepherd, Lori
I believe we have reset it. Please really look at the documentation http://bioconductor.org/developers/how-to/git/ If you set up remotes to be linked to Bioc, please always remember to pull from bioc before making changes git pull upstream master # make changes # push to both git push #

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-17 Thread Cuklina Jelena
Dear Lori, dear Bioconductor team, I have re-cleaned the repository, could you please run the tests again and reset the upstream? Thank you very much for the support. Best regards, Jelena Čuklina. On 16 Oct 2019, 16:01 +0200, Shepherd, Lori , wrote: Hi Jelena, I was running some checks on

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-16 Thread Shepherd, Lori
Hi Jelena, I was running some checks on your repository before I reset it. It looks like you cleaned the repository but the the repository you cleaned is not from our git.bioconductor.org. This is evident as the release commits that occur are missing from your current repo ``` git log --all

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-16 Thread Shepherd, Lori
I am working on the reset now. I will email again when we think it is set. Sorry for the delay. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-16 Thread Cuklina Jelena
Dear Bioconductor team, May I ask on the process of the package reset? How do I know the Bioconductor upstream of my project has been updated/failed? Thank you very much for your work. Best regards, Jelena Čuklina. On 14 Oct 2019, 18:49 +0200, Jelena Chuklina , wrote: Dear Bioconductor team,

[Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-14 Thread Jelena Chuklina
Dear Bioconductor team, We’ve cleaned the updated repository for large files and duplicates and would like to reset the upstream master branch as well as release branch. Could you please help with that? GitHub version of the package is: https://github.com/symbioticMe/proBatch Thank you in