-project.org
Subject: Re: [Bioc-devel] Reference manual as HTML
Hopefully they'll remedy these problems. They've clearly put a enormous
effort on this.
It sounds like a non-trivial effort to generate the tens of thousands of
Bioconductor man pages in HTML and keep them in sync with whatever comes
__
> From: Bioc-devel on behalf of Pages, Herve
>
> Sent: 27 September 2019 00:14
> To: Martin Maechler; Martin Morgan
> Cc: bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] Reference manual as HTML
>
> and let's not forget the rdrr site that provides
Bioc-devel on behalf of Pages, Herve
Sent: 27 September 2019 00:14
To: Martin Maechler; Martin Morgan
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Reference manual as HTML
and let's not forget the rdrr site that provides HTML versions of all R
package man pages in the known world:
and let's not forget the rdrr site that provides HTML versions of all R
package man pages in the known world:
https://rdrr.io/bioc/DESeq2/man/DESeq.html
Unfortunately the links across man pages are not clickable :-/
H.
On 9/26/19 06:19, Martin Maechler wrote:
>> Martin Morgan
>>
> Martin Morgan
> on Wed, 25 Sep 2019 21:10:24 + writes:
> Our recollection is that there is no 'flag' in R CMD build to create HTML
rather than PDF vignettes; without that it would be non-trivial to create html
output, e.g., links across pages. (I *think* the installed
man pages (which can easily be overwhelming
for large packages) are readily available to read and search.
Laurent
From: Martin Morgan
Sent: 25 September 2019 23:10
To: Laurent Gatto; Ludwig Geistlinger; bioc-devel@r-project.org
Subject: Re: [Bioc-devel
Oops, I said 'vignettes' but meant the reference manual. Html vignettes (from
appropriate Rmd files) are have been available for a number of years.
Martin
On 9/25/19, 5:10 PM, "Martin Morgan" wrote:
Our recollection is that there is no 'flag' in R CMD build to create HTML
rather than
, 26 September 2019 7:10 AM
> To: Laurent Gatto ; Ludwig Geistlinger
> ; bioc-devel@r-project.org
>
> Subject: Re: [Bioc-devel] Reference manual as HTML
>
> Our recollection is that there is no 'flag' in R CMD build to create HTML
> rather than PDF vignettes; without that
.
From: Bioc-devel on behalf of Martin Morgan
Sent: Thursday, 26 September 2019 7:10 AM
To: Laurent Gatto ; Ludwig Geistlinger
; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Reference manual as HTML
Our recollection is that there is no 'flag' in R CMD build to create HTML
rather than
Our recollection is that there is no 'flag' in R CMD build to create HTML
rather than PDF vignettes; without that it would be non-trivial to create html
output, e.g., links across pages. (I *think* the installed package html help
pages are generated on the fly...)
What is your experience with
I think this would be very useful. This is one of the reasons I create pkgdown
sites for my packages: manual pages, news and html vignettes are readily
available for all (including me) to browse.
Best wishes,
Laurent
From: Bioc-devel on behalf of
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