Re: [Bioc-devel] lumi package is not available

2016-11-10 Thread Gang Feng
2&\(Bf(B mailto:r04945...@ntu.edu.tw>>, "bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>" mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] lumi package is not available Pan Du has several packages. Is this an issue for all of those packages or just

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread James W. MacDonald
>> Pan Du has several packages. Is this an issue for all of those packages >> or just lumi? >> > > I think that's a reasonable conclusion. Martin > I am not sure I follow. What is the reasonable conclusion? That it's just this one package, or all of them? Jim -- James W. MacDonald, M.S. Biosta

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread Martin Morgan
On 11/09/2016 05:25 PM, James W. MacDonald wrote: On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan mailto:martin.mor...@roswellpark.org>> wrote: I updated the code to remove the R CMD check error (svn revision r123826) and to clean up miscellaneous NOTEs about formatting (r123827). I

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread James W. MacDonald
On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan wrote: > I updated the code to remove the R CMD check error (svn revision r123826) > and to clean up miscellaneous NOTEs about formatting (r123827). I ported > these changes to release. > > It is likely that the package has a number of other similar p

Re: [Bioc-devel] lumi package is not available

2016-11-09 Thread Martin Morgan
I updated the code to remove the R CMD check error (svn revision r123826) and to clean up miscellaneous NOTEs about formatting (r123827). I ported these changes to release. It is likely that the package has a number of other similar problems (assigning exprs() with incompatible dimnames) so

Re: [Bioc-devel] lumi package is not available

2016-10-28 Thread Gang Feng
Hi, We are working on one issue in the lumi package. Sorry about this. Gilbert On 10/28/16 3:20 AM, "Bioc-devel on behalf of 王棣台" wrote: >Hi, all > >I am the author of package "anamiR". >I got a Warning message "Warning: dependency ''lumi" is not available" >when I installed anamiR. >Also, I

Re: [Bioc-devel] lumi package is not available

2016-10-28 Thread Kevin RUE
Dear T.Wang. First of all, as a general rule, please include the sessionInfo() output and command that caused the error to facilitate useful replies. Here I will assume that you are using the devel branch of BioC on the latest R/BioC setup available. As far as I know, your problem is still a cons