[Bioc-devel] New package submission process

2014-06-26 Thread Xiaobei Zhao
Hi everyone, I am about to submit a new package at Bioconductor. I have followed the instructions linked below to prepare my package, http://master.bioconductor.org/developers/package-guidelines/ Early this week, I sent an initial request according to the contact information listed at

Re: [Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called From A Package

2014-06-26 Thread James W. MacDonald
Hi Dario, Isn't an easier fix to simply add ImportFrom(limma, loessFit) in your NAMESPACE file? Best, Jim On 6/26/2014 12:00 AM, Dario Strbenac wrote: Hello, I am writing a package that has a function that uses estimateGLMRobustDisp, leading to an error : Error in dispBinTrend(y,

Re: [Bioc-devel] New package submission process

2014-06-26 Thread Dan Tenenbaum
- Original Message - From: Xiaobei Zhao xiao...@binf.ku.dk To: bioc-devel@r-project.org Sent: Thursday, June 26, 2014 5:20:31 AM Subject: [Bioc-devel] New package submission process Hi everyone, I am about to submit a new package at Bioconductor. I have followed the

[Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called From A Package

2014-06-26 Thread Gordon K Smyth
Date: Thu, 26 Jun 2014 04:00:11 + From: Dario Strbenac dstr7...@uni.sydney.edu.au To: bioc-devel@r-project.org bioc-devel@r-project.org Subject: [Bioc-devel] edgeR estimateGLMRobustDisp Fails when Called From A Package Hello, I am writing a package that has a function that uses

Re: [Bioc-devel] New package submission process

2014-06-26 Thread xiaobei
Many thanks to Dan and Kieran O'Neill! I will adjust my plan according to the estimated timeline. Xiaobei On 6/26/2014 5:19 PM, Kieran O'Neill wrote: After the initial response, the package will be sent on to a reviewer, who will usually respond within a week or two, but could take longer.