rather than aiming for an a large ExperimentData package it might make more
sense to create an ExperimentHub package, with the data hosted in the cloud for
download-on-demand. It is cached locally so the download cost is only paid
once. This is especially useful if your data consist of several
Hi,
I think this is a good path forward. Please take a look at the link below
which will provide further guidelines for you,
http://bioconductor.org/developers/package-guidelines/#data
https://bioconductor.org/developers/package-submission/#experPackage
Dear,
we're planning on submitting a new package to Bioconductor. Due to the fact
that this package revolves around simulation methods for massive datasets, the
vignette necessarily need about 10 Mb of data and way more than 5 minutes to
build. We were wondering how we would proceed best to
typo - heatplus and topGO have responded directly.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of
All of these package have been notified from the Bioconductor side as well. We
hope the maintainers will respond shortly.
heatmap and topGO have responded directly and are working on fixes. I hope
the others are too.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer
In case it's not known, paraphrasing from CRAN notification email,
CRAN [sic!] packages:
TROM, demi, diffMeanVar, maGUI, metaboGSE
risk being archived on December 7 because broken Bioconductor dependencies:
Heatplus, missMethyl, oligo, oligoClasses, topGO
prevent pdInfoBuilder from being
Hi,
Which email would Russ like to use as his email account with BiocCredentials?
Best,
Nitesh
> On Nov 22, 2019, at 5:11 PM, Peter Haverty
> wrote:
>
> I'd like to transfer gCrisprTools to Russ Bainer (russ.bai...@gmail.com,
> rbai...@mazetx.com). How do I do that?
>
>
Great, thanks!
-R
On Tue, Nov 26, 2019 at 1:07 PM Turaga, Nitesh <
nitesh.tur...@roswellpark.org> wrote:
> Hi,
>
> You should be able to access your package once you activate your
> BiocCredentials account and activate it.
>
> Best
>
> Nitesh
>
> > On Nov 26, 2019, at 3:54 PM, Russell Bainer
>
Hello Nitesh,
Please associate it with russ.bai...@gmail.com.
Thanks very much. I think that I will also need to associate my github
account (RussBainer), but i see that there is a FAQ about that and will
contact you in due course if I'm not able to access it.
Best Regards,
-Russ
On Tue, Nov
Hi Lori,
Let me know if you don't hear from Benilton. It shouldn't be much work to
fix oligo - we could convert to using Gviz for the graphic that is
currently using GenomeGraphs. I can make the change next week if necessary.
Best,
Jim
On Tue, Nov 26, 2019 at 12:57 PM Shepherd, Lori <
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