l.s.
I cannot seem to be able to activate my account on the bioconductor git. I get
a message saying my email address (the same one on the package help file) is
not associated with a maintainer of a Bioconductor package. The email address
is write simply is
r.xavierdemene...@vumc.nl
as
Windows uses separate processes that do not share memory (SnowParam()), whereas
linux / mac by default use forked processes that share the original memory
(MulticoreParam()). So
> y = 1
> param = MulticoreParam()
> res = bplapply(1:2, function(x) y, BPPARAM=param)
works because the function
I'd like to change the email address associated with my
Bioconductor account, and also update the ownership of my packages to my
personal Github account (I originally registered both of these with my
employer, and I have since left the company). Could you please direct me to
documentation that
Hi,
I recently received error messages for 2 packages. As a worst-case-scenario,
it is acceptable if the sRAP package had to be removed. However, I need to
resolve the issue for the COHCAP package.
This is odd because I don’t think I have updated either package in the last
year or so. In
Hi BioC-devel,
I am the author of the Bioconductor package APAlyzer (
https://bioconductor.org/packages/release/bioc/html/APAlyzer.html). We are
trying to push our updated package (version 1.1.1) to Bioconductor.
However, the git tutorial seems doesn't work in my case, here's what I've
done:
$
Please see the top portion of this page
http://bioconductor.org/developers/how-to/troubleshoot-build-report/. Updates
are not instantaneous; it can take 24-48 hours to appear, and will only appear
on the landing page if the build and check completed without Error.
Get Outlook for
Hi BioC-devel,
I spent some time yesterday getting my Windows laptop ready to debug a
Windows OS-only issue in regionReport (bioc-release 3.10), but
ultimately I couldn't reproduce it. Since the error seems to be some
type of cache, I bumped the version number but it still failed today
and it
Good day,
I am not sure how to fix my package properly, even with the good example. A
link to the specific part of my function is
https://github.com/DarioS/ClassifyR/blob/e35899caceb401691990136387a517f4c3b57d5e/R/runTests.R#L567
and the example in the help page of runTestsEasyHard function
Good day,
Thanks for the examples which demonstrate the issue. Do you have other
recommendations if, inside the loop, another function in the package is being
called and the variable being passed is the ellipsis? There are only a couple
of variables which might be provided by the user
The question is a bit abstract for me to understand and it might be better to
point to actual code in a git repository or similar...
Inside a package, something like
fun = function(x, y, ...) {
c(x, y, length(as.list(...)))
}
user_visible <- function(x, ...) {
y = 1
You'll have to activate your account first,
https://git.bioconductor.org/BiocCredentials/account_activation/
> On Mar 17, 2020, at 5:11 PM, ni41435_ca wrote:
>
> The SIM package is registered to mboetze...@hotmail.com.
>
> You can change the email on BiocCredentials app yourself.
>
>
The SIM package is registered to mboetze...@hotmail.com.
You can change the email on BiocCredentials app yourself.
Best,
Nitesh
> On Mar 17, 2020, at 11:52 AM, r.mene...@nki.nl wrote:
>
> l.s.
>
>
> I cannot seem to be able to activate my account on the bioconductor git. I
> get a message
Thanks very much for the response. Can you recommend a way to do password
recovery? I no longer have access to the registered email address, and I'm
afraid that I registered long enough ago that I don't have the password
that I used.
On Tue, Mar 17, 2020 at 2:05 PM Turaga, Nitesh <
Hi,
There are a couple of things you'd have to do,
1. In the BiocCredentials app, you'd have to change your email address
registered. And update your SSH keys if needed, add your personal Github ID as
well.
2. In the DESCRIPTION file of the package, you'd have to change your email
address to
Hi Bioc team,
I am the maintainer of the package /waddR/.
We have had built issues on the active branch recently, due a dependency
being unavailable. After pushing a patch, the issues were resolved on
the devel branch.
Is it possible to merge these critical changes (version 1.1.4) to the
Good day,
I have a loop in a function of my R package which by default uses bpparam() to
set the framework used for parallelisation. On Windows, I see the error
Error: BiocParallel errors
element index: 1, 2, 3, 4, 5, 6, ...
first error: object 'selParams' not found
This error does not
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