Dear all,
Two possible candidates for BiocGenerics:
GenomeInfoDb::species
standardGeneric for species defined from package GenomeInfoDb
function (x)
standardGeneric(species)
environment: 0x7278130
Methods may be defined for arguments: x
Use showMethods(species) for currently available
Ok, I had to manually remove the BiocInstaller package, restart R and then
run biocLite and I am now on BiocInstaller 1.17.5 ~ Bioconductor 3.0
Clearly, there is some issue with the IS_UPGRADEABLE variable which (I
guess) is initialized at install time.
On Tue, Mar 10, 2015 at 2:01 PM, Kasper
Hi Liu,
On 03/10/2015 10:08 AM, Liu, Yuanhang wrote:
Hello, everyone,
I recently submitted my first R package. Everything checks fine on my
local machine. However, when I upload the tarball to the single package
builder at bioconductor.org, it gave me the following error on windows
system:
On 03/10/2015 01:01 PM, Kasper Daniel Hansen wrote:
Yeah, I basically have one version of R devel which is re-compiled every morning
and then all packages are updated. This is probably happening around the
transition from R-devel using one version of BiocInstaller to another. Reading
the code,
FWIW I encountered a similar situation a couple of weeks ago. I should
have said something, I guess.
On Tue, Mar 10, 2015 at 2:08 PM, Kasper Daniel Hansen
kasperdanielhan...@gmail.com wrote:
Ok, I had to manually remove the BiocInstaller package, restart R and then
run biocLite and I am now
On Tue, Mar 10, 2015 at 12:30 PM, Martin Morgan mtmor...@fredhutch.org wrote:
On 03/10/2015 11:08 AM, Kasper Daniel Hansen wrote:
Ok, I had to manually remove the BiocInstaller package, restart R and then
run biocLite and I am now on BiocInstaller 1.17.5 ~ Bioconductor 3.0
any idea how
On 03/10/2015 11:08 AM, Kasper Daniel Hansen wrote:
Ok, I had to manually remove the BiocInstaller package, restart R and then
run biocLite and I am now on BiocInstaller 1.17.5 ~ Bioconductor 3.0
any idea how BiocInstaller 1.16.x was installed in the R-3.2 library? I think
install.packages()
