Re: [Bioc-devel] Bioconductor 3.4 is released

On 10/18/2016 06:07 PM, Lorena Pantano wrote: Hi all, I just checked my package and I see some issues, maybe something i did wrong : 1- http://bioconductor.org/packages/release/bioc/html/isomiRs.html : it says this is the

Re: [Bioc-devel] Package "not supported" on some platforms, and dependent packages

Agh, I could have looked better in the Git mirror code ;) Anyway, thanks a lot for the tip! No worries about removing the file if the parent package gets supported. However, I've never tried to run the VEP script on Windows, which I expect is pre-requisite for the package building

Re: [Bioc-devel] Package "not supported" on some platforms, and dependent packages

- Original Message - > From: "Kevin RUE" > To: "bioc-devel" > Sent: Tuesday, October 18, 2016 3:28:23 PM > Subject: [Bioc-devel] Package "not supported" on some platforms, and > dependent packages > Hi all, > > Heartless logic

Re: [Bioc-devel] staging.bioconductor.org not responsive

Sorry, bioc-devel, that email wasn't meant for you! Martin On 10/18/2016 06:25 PM, Martin Morgan wrote: Hi Dan, et al., When I try to ssh I get $ ssh ubu...@staging.bioconductor.org ssh_exchange_identification: read: Connection reset by peer and it seems like the sync with master didn't

[Bioc-devel] Package "not supported" on some platforms, and dependent packages

Hi all, Heartless logic works as follows: - ensemblVEP is "not supported" on Windows (build report ). Completely understandable. - My package depends on ensemblVEP. - The build system reports an error on Windows

Re: [Bioc-devel] staging.bioconductor.org not responsive

Try ssh'ing as the biocadmin user, not ubuntu. I am able to do both but that just might mean my public keys are in both places. There is a crash.log in /home/biocadmin/bioc-test-web/bioconductor.org which may have some hints as to what happened. Dan - Original Message - > From:

[Bioc-devel] staging.bioconductor.org not responsive

Hi Dan, et al., When I try to ssh I get $ ssh ubu...@staging.bioconductor.org ssh_exchange_identification: read: Connection reset by peer and it seems like the sync with master didn't happen at 3pm / 3:20pm. Hints? If there was a commit problem, it's most likely config.yaml at

Re: [Bioc-devel] Bioconductor 3.4 is released

Hi all, I just checked my package and I see some issues, maybe something i did wrong : 1- http://bioconductor.org/packages/release/bioc/html/isomiRs.html : it says this is the development page, I guessed that this will go, but

[Bioc-devel] Bioconductor 3.4 is released

Thanks to all the developers for your contribution to the project! --- --- October 18, 2016 Bioconductors: We are pleased to announce Bioconductor 3.4, consisting of

[Bioc-devel] Ascona Workshop 2017: Call for abstracts

Ascona Workshop 2017 -- Statistical Challenges in Single-Cell Biology Abstract Submission now open! We would like to announce and invite your participation in a workshop on Statistical Challenges in Single-Cell Biology, to be held from April 30 to May 5, 2017, at Monte Verità, Ascona, in the

Re: [Bioc-devel] BioC 3.4: several package failures traceable to vsn req. R >= 3.4.0?

Thanks Hervé. R. On Mon, 17-10-2016, at 11:32, Hervé Pagès wrote: > Hi Ramon, > > Yes the issue is known. The vsn maintainers have fixed the problem > yesterday in svn, right before the builds started. All the failures > due to vsn not installing on the build machines