On 10/12/2017 04:13 PM, cstrato wrote:
Dear Martin,
Thank you for your informative reply.
1, My SSH public key that you mentioned is the correct one.
2, After following your advice and running
ssh -v g...@git.bioconductor.org
I got:
OpenSSH_7.4p1, LibreSSL 2.5.0
debug1: Reading configu
Hi Erik,
Thanks for noticing this. The landing pages update every 20 minutes but because
the builds only occur once a day the package version on the page only change
once a day.
Yesterday the build script that generates the list of packages to be propagated
(i.e., versions have been bumped) to
Dear Martin,
Thank you for your informative reply.
1, My SSH public key that you mentioned is the correct one.
2, After following your advice and running
ssh -v g...@git.bioconductor.org
I got:
OpenSSH_7.4p1, LibreSSL 2.5.0
debug1: Reading configuration data /etc/ssh/ssh_config
debug1: C
Hi,
The white space (formatting) is a mistake on our end.
But as far as the instructions go it is mostly accurate.
Once GIT reports after the “merge” that you have conflicts, you could also, try
this command,
`git mergetool`
which will open a GUI to help you choose which version you
While resolving conflicts according to this protocol
https://master.bioconductor.org/developers/how-to/git/resolve-conflicts/
I ran into a quite a number of seeming duplications of the file content
between HEAD and upstream/master. It looks like either some sort of
whitespace or end of line formatt
On 10/08/2017 01:37 PM, cstrato wrote:
Dear all,
I wanted to update my package 'xps' and realized that I can no longer
use 'svn commit'
In order to use GIT I did the following:
1, I created a public key '~/.ssh/id_rsa.pub'
2, I did submit my 'SSH public key or github id to Bioconductor',
Tomas Kalibera on R-core says that in R-devel
I've increased the number of DLLs... Now it is 614 on systems where
the soft limit on open files allows, but R now attempts to increase
the limit when needed. If this is not possible, the maximum will be
smaller. R will fail to start if the maximum c
Thanks for looking into this Andrzej!
On Wed, Oct 11, 2017 at 6:02 PM, Andrzej Oleś wrote:
> Thanks Leo for drawing our attention to this issue. It will probably require
> some additional modifications to the postprocessing scripts in order to
> account for the now missing Mac tar balls. I will l
Hi Eugenia
Your package was accepted on August 1st, and added to the SVN list of packages
before the SVN —> GIT transition on August 15th. You should have received an
email with the “e.galeota” as your SVN ID to access your package on SVN.
> On Oct 12, 2017, at 9:44 AM, Eugenia Galeota
>
Thank you Lori,
I have a couple of small questions, how do I know that my SVN id is
e.galeota? Because my user id on Github for Onassis is eugeniaeueu and I
submitted the package through Github Bioconductor contributions. When
Onassis has been accepted in Bioconductor I received a mail @eugeniaeueu
Once the package moves over to the daily build system, the builds are not
triggered immediately on a version bump and the results will no longer post to
the issue tracker. The package is considered part of the daily build system
and the version bump and successful push to
g...@git.bioconductor
Hi, I'm having problems in updating Onassis. I followed all the
instructions to add the ssh public key to the repository and also filled
the form to ask it to Bioconductor. A second issue is related to the build.
I am changing the version of the package but no build starts, is the hook
still workin
Dear All,
I have noticed that on the latest build report, a package I maintain,
OncoSimulR
(http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/veracruz1-buildsrc.html),
has status timeout on veracruz1. Package building stalls during
creation of the vignette (that is not happening in
Hey, Bioconductors!
I recently got my package (“seqCAT”) accepted into bioconductor and I’m now
trying to fix the last things before release (this is my very first R package).
I updated the NEWS file and updated the version number and pushed to the
Bioconductor git repository; it successfully b
14 matches
Mail list logo
