Re: [Bioc-devel] Unable to install GenVisR from bioc release

2018-11-09 Thread Obenchain, Valerie
Hi Zach, GenVisR has not built on Linux so is not available on that platform. It has built on Windows and Mac so those binaries are available. The reason the package appears not available is because we purged the repos, explained here

[Bioc-devel] Unable to install GenVisR from bioc release

2018-11-09 Thread Skidmore, Zach
Hi All, I’ve gotten a few emails saying GenVisR is not available on R 3.5.1 Despite it being available on bioc 3.8? Any ideas on why this is happening (following the installation instructions on bioc). I’m still trying to fix a failing visual test case which was going on when bios 3.8 was

Re: [Bioc-devel] submitting a tiny data package (GmapGenome.Hsapiens.rCRS)

2018-11-09 Thread Pages, Herve
Hi guys, OTOH indexMTGenome() only takes 20s on my laptop to create, install and load GmapGenome.Hsapiens.rCRS. Note that the size on disk of GmapGenome.Hsapiens.rCRS is 449M which is surprising considering that the input of indexMTGenome() is a tiny 83K FASTA file. That's for the source

Re: [Bioc-devel] submitting a tiny data package (GmapGenome.Hsapiens.rCRS)

2018-11-09 Thread Obenchain, Valerie
Hi Tim, The options would be to make a data experiment package or put the data in ExperimentHub. Lori is our resident expert on these things but is out today. She'll be back next week and can provide more info. Valerie On 11/8/18 9:27 AM, Tim Triche, Jr. wrote: > What's the best/fastest way