Got it! Thank you all for the information!
On Tue, Jun 25, 2019 at 10:24 AM Pages, Herve wrote:
> Also please note that data experiment packages are on a different
> report (and SBGNview.data is in it):
>
>https://bioconductor.org/checkResults/3.10/data-experiment-LATEST/
>
> As Lori said
Also please note that data experiment packages are on a different
report (and SBGNview.data is in it):
https://bioconductor.org/checkResults/3.10/data-experiment-LATEST/
As Lori said it can take a few build cycles before SBGNview.data gets
installed on all the build machines.
H.
On 6/25/19
There are system environment variables that can be set that
ExperimentHub/AnnotationHub will grab automatically from the environment.
If a computer has the system environment variable EXPERIMENT_HUB_PROXY
(ANNOTATION_HUB_PROXY) the hubs recognize these and set them automatically
rather
Data packages are built Sunday, Tuesday, and Thursday. It can sometimes take a
full week for the experiment package to build and the software package to pick
up on it. Please be patient and if it still can't find it by next week please
let us know and we will investigate further.
Lori
The error reported by the build system is reproducible on my mac running R
CMD check on
banocc_1.8.0.tar.gz
The check error is pretty terse. I turned your vignette into
an R script using knitr::purl and ran into
> compiled_banocc_model <- rstan::stan_model(model_code =
banocc::banocc_model)
Hi All
The check of my package is failing locally due to the error in
"csaw::scaledAverage" function. Untill version 3.9, I used to pass a
DGElist object to this function call as follows:
/dat.y <- csaw::asDGEList(data, assay = assay.data)//# create DGElist
from SE object
//dat.y <-
