Thanks! That makes sense, after getting the most recent version off github
and not through Bioconductor I can replicate the error. That should help
with debugging. Thanks again for your help,
Doug
On Mon, Oct 7, 2019 at 5:30 PM Pages, Herve wrote:
> Hi,
>
> It looks like the error occurs in
Hi,
It looks like the error occurs in the Heatmap() function from the
ComplexHeatmap package. What happens is that the devel version of the
ComplexHeatmap package went thru some important changes back in July and
August but its version never got bumped so these changes never
propagated. As a
I think we have fixed the issue and it should clear up on tonights build report.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From:
Hello,
Our package (named 'profileplyr') has been failing on the development
version of Bioconductor that will be released later this month. I am having
difficulty debugging the error because the package continually passes
checks on my system (using BioC devel). I have tried many ways to try and
This needs to be fixed on the server. Thank you for making me aware. I will
look into it.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
Hi all,
My package passes all tests on linux, but fails on the OS X check (exact error
is below). It appears to be a problem with the VEP perl modules on the server.
Specifically, it is complaining that Bio::DB::HTS::Tabix is not installed. Is
there something I can do or does it need to be
The Bioconductor Team is continuing to identify packages that will be
deprecated in the next release to allow for the Bioconductor community to
respond accordingly.
The final list for the 3.10 release is as follows:
Maintainer requested deprecation:
Software:
SNPchip
GenomeGraphs
HTSanalyzeR
