Hi Julien,
I've done a basic review of your package, BgeeCall as a software package.
This is a very basic review of just running BiocCheck. There need to be some
improvements in your package to make the switch.
https://gist.github.com/nturaga/189b71ca4e6247747b72d4163a7b2bf1
Please take a
On 12/4/19 17:39, Vincent Carey wrote:
> The RangedData objects are still viable with the software you are using,
> but trying
> to set colnames will trigger an error. In Bioc 3.11 you won't even be able
> to use
> the RangedData class at all. So an intervention is needed now.
>
> The
Thank you so much for your help, Nitesh! I was able to log in.
Have a good one,
Stefanie
> On Dec 5, 2019, at 7:45 AM, Turaga, Nitesh
> wrote:
>
> Hi,
>
> Your package was registered to stefanie.sch...@molgen.mpg.de.
>
> But this has been changed now. You should be able to activate your
Hi Vinh,
I checked the installation from BiocManager. It seems the same version 1.1.2 is
being installed by BiocManager as well as from the Bioconductor git repo.
Can you tell me how to test for this bug? I just ran the vignette but don't see
an error.
It will be more helpful for us to debug
The changes you made seem to be reflected in the version of PhyloProfile
that I get:
> sortInputTaxa
function (taxonIDs = NULL, rankName, refTaxon = NULL, taxaTree = NULL)
{
ncbiID <- fullName <- abbrName <- NULL
if (missing(rankName))
return("No taxonomy rank name given!")
Hello developers,
These builds were announced on this list in Nov. 2017 (see
https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012326.html).
The purpose of the "Long Tests builds" is to run tests that are too long
to run in the 40 min. allowed by the daily builds. With the Long Tests
Dear Bioc Team,
I am maintainer of the PhyloProfile package. Last week I made a bug fixed
for the package and push it into both release_3_10 as well as the master
(development) branch. The build and check for both PR were successful and I
can see the new source files with the correct version
Hi Stefan,
Pasting the reply from Mike Smith, a few hours ago, in the email thread
"Error in building vignette for previously stable version":
This looks like the same problem a few others have reported. The latest
> advice was to wait for BiocStyle to be updated to reflect changes in
>
Dear bioc-devel team,
I have received a notification that the build of my package (without any
changes) resulted in the following error. I would appreciate some assistance,
because I don't know what is causing the error.
Thanks,
Stefan
! LaTeX Error: Command \VerbBar already defined.
Its odd that DelayedArray wouldn't be found. I'm going to try to kick off a
manual rebuild on the Single Package builder to see if it goes away. I'll move
the rest of the correspondence to your open contributions issue.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer
Hi,
Your package was registered to stefanie.sch...@molgen.mpg.de.
But this has been changed now. You should be able to activate your
BiocCredentials account at stefanie.sch...@gmx.de
Best,
Nitesh
> On Dec 4, 2019, at 10:42 PM, Stefanie Senger wrote:
>
> Hi Lori,
>
>
> I just tried to
Hi Jakob,
This looks like the same problem a few others have reported. The latest
advice was to wait for BiocStyle to be updated to reflect changes in
rmarkdown, so you don't need to do anything for now:
https://stat.ethz.ch/pipermail/bioc-devel/2019-December/015870.html
Mike
On Thu, 5 Dec
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