[Bioc-devel] Maintainer for preciseTAD

Hi, I noted our package https://bioconductor.org/packages/preciseTAD/ shows build error. This is because https://CRAN.R-project.org/package=DMwR was removed. Please, add me as a maintainer to the preciseTAD repo. Spiro should remain a maintainer, but he is getting harder to reach after graduation.

Re: [Bioc-devel] Log in to the BiocCredentials app

Hi Nitesh, I was surprised that my account had never been activated; maybe I was using some pre-git settings, until something stopped working. Anyhow, I just activated the BiocCredentials and it's working now. Many thanks, Mauro On Tue, 4 May 2021 at 14:34, Nitesh Turaga wrote: > > Hi Mauro,

Re: [Bioc-devel] Log in to the BiocCredentials app

Hi Mauro, I just checked and you�ve never activated your account. You should try to activate it before you do anything else. Best, Nitesh From: mauro castro Date: Tuesday, May 4, 2021 at 1:31 PM To: Nitesh Turaga Cc: Bioc-devel Subject: Re: [Bioc-devel] Log in to the BiocCredentials app Hi

Re: [Bioc-devel] Log in to the BiocCredentials app

Hi Nitesh, Thank you for your email. I tried to do the password reset again, but still haven't received an email from maintai...@bioconductor.org (and also not in the spam box). I tried the BiocCredentials app as in the attached print screen, using the same email from my r-project.org mailing

Re: [Bioc-devel] Can anyone reproduce this? Possible bug or typo in BiocManager:::.version_map() or upstream

It's because Bioconductor won't be building (supporting) R-4.2 (R-devel) until six months from now, even in the 'devel' branch of Bioconductor. Bioc 3.14 (once it becomes available after the Bioconductor release) will use R 4.1 and the table will be updated to have line 34 as 3.14 / 4.1. There

Re: [Bioc-devel] Build error on Mac re: Arial font and polygon edges

Good morning Hervé, Thank you - I checked Monday am, and sure enough those errors were resolved. Best,Shraddha On Fri, Apr 30, 2021 at 8:51 PM Hervé Pagès wrote: > Hi Shraddha, > > Hundreds of Bioconductor packages are affected since yesterday. Please > ignore. > > Today we've upgraded R to R

Re: [Bioc-devel] Log in to the BiocCredentials app

Hi Have you checked your Spam or junk mail? You should have received an email from maintai...@bioconductor.org - Bioconductor git credentials administrator. If it�s being filtered or something, could you please try to do the password reset again? I

Re: [Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

Hi, The branch your linked is going to be the upcoming RELEASE_3_13 branch and currently �devel� (master branch). I�m not sure how to help you as far as debugging the error goes, the best way is first try to be able to reproduce it on your local machine. You can also add a statement to avoid

[Bioc-devel] Log in to the BiocCredentials app

Hi All, I’m a Bioconductor package maintainer, but I could not log in to the BiocCredentials app to submit a new SSH public key. A already tried to reset the password, but I didn't receive any email with instructions for setting a password.

[Bioc-devel] Can anyone reproduce this? Possible bug or typo in BiocManager:::.version_map() or upstream

Hi, I get > BiocManager::install() Error: Bioconductor version '3.13' requires R version '4.1'; R version is too new; see https://bioconductor.org/install and this appears to be because of the last line in > BiocManager:::.version_map() BiocR BiocStatus RSPM MRAN …(29 lines

Re: [Bioc-devel] Cannot find my package "interacCircos" on check results of BioC3.13

It looks like the package was just put through the final steps of addition yesterday. I expect it to show up on the nightly builds in either today or tomorrow's build report. If it does not please follow up again. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive

Re: [Bioc-devel] Sudden Bioconductor nightly build fail for IsoCorrectoRGUI: cannnot add binding of 'variable' to the base environment

This is because of a change in base R https://github.com/wch/r-source/blob/9ad27a744572fca453665e97110ded41a2680a57/doc/NEWS.Rd#L257 It can be reproduced by using a recent version R-4-1. Looking at your code, I guess it is at

[Bioc-devel] Cannot find my package "interacCircos" on check results of BioC3.13

Hello, I’m the maintainer of “interacCircos”, which should be accepted two weeks ago. However, I still cannot find the build results of “interacCircos” on the latest nightly build of BioC3.13, which should be available at https://bioconductor.org/checkResults/