Hi bioc-devel,
Similar to my qsvaR email, can you give me git access to TREG? Louise
is still the primary maintainer, but I'm helping her here and there.
Thanks,
Leo
Leonardo Collado Torres, Ph. D.
Investigator
LIEBER INSTITUTE for BRAIN DEVELOPMENT
855 N. Wolfe St., Suite 300
Baltimore, MD
Hi BioC-devel,
Could you give access to Hédia Tnani (https://github.com/HediaTnani
from my team) and myself to push updates to qsvaR? Joshua M. Stolz is
no longer working at LIBD and is no longer maintaining qsvaR. Hédia
will take over maintenance duties, though I'll help her here and
there.
Do you want to join the Bioconductor Technical Advisory Board, or do you know
someone who would be a great fit?
Then fill this short form (if you're nominating someone else, please first
confirm that they are interested) before May 31 (at midnight in a time zone of
your choice):
I opened two issues for further discussion of the technical aspects.
https://github.com/Bioconductor/BiocManager/issues/165
https://github.com/Bioconductor/pkgrevdocs/issues/108
Just to be clear, as noted at the end of the second issue and on the web page
you mention, a Bioconductor package
Dear Martin and Vince
thank you, very insightful points. Indeed I think it’s primarily a matter of
documentation and priming, and, e.g., adding Martin's lines prominently enough
e.g. to https://contributions.bioconductor.org/use-devel.html and a reference
to it into the manpage of
Thanks for these observations Wolfgang, I am glad I read to the end,
because as you say,
https://solutions.posit.co/envs-pkgs/bioconductor/
has lots of interesting information. As I personally have no
experience with renv or Connect
much of the motivating detail is opaque to me.
I would
For off-piste use I would have consulted `setRepositories(graphics = FALSE)`
and then
```
## use Sys.setenv() before setRepositories
Sys.setenv(R_BIOC_VERSION="3.18")
setRepositories(ind = 1:4) # CRAN plus Bioc soft, anno, and expt repos
getOption("repos")# check
Hello,
Sorry for the late reply, I will fix the package this week.
I will also need to do a major change in the code since GDC legacy will be
shut down in the next months.
Best regards,
Tiago Chedraoui Silva
On Fri, Apr 28, 2023 at 10:04 AM Dario Strbenac via Bioc-devel <
Hi,
I am wondering whether:
1. it could be easier to install Bioconductor packages (devel or release) on
R-devel (or other non-standard R versions) using BiocManager::install (I may be
stirring a hornet’s nest with that:)
2. whether its documentation needs to be updated and/or its
