Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Martin Grigorov
Hi Kasper, According to https://github.com/Bioconductor/BBS/blob/9ebb2cf20e70e4bebf24a2a824a67193de821b08/3.19/bioc-mac-arm64/kjohnson3/config.sh#L17-L20 the machine has 24 vCPUs. The automatic/weekly build utilizes 12-16 out of those at any given time! With the respective RAM and disk usage. By

Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Kasper Daniel Hansen
To be a bit more clear and vague at the same time: currently, some of our macOS builders exhibit weird slowdowns when the build system is run automatically compared to running builds "by hand". This is pretty weird, and hopefully we can figure out the cause and fix it. Specifically, builds on

Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Jacopo Ronchi
Ok, understood. Thanks Il mer 7 feb 2024, 12:46 Vincent Carey ha scritto: > We need a bit of internal discussion before committing to this notion. I > will get back to the list on this. > > On Wed, Feb 7, 2024 at 6:34 AM Jacopo Ronchi > wrote: > >> Dear Vincent, thanks for your answer. So, at

Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Vincent Carey
We need a bit of internal discussion before committing to this notion. I will get back to the list on this. On Wed, Feb 7, 2024 at 6:34 AM Jacopo Ronchi wrote: > Dear Vincent, thanks for your answer. So, at least for now, can I ignore > the warning on macOS for the submission of MIRit? > > Il

Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Jacopo Ronchi
Dear Vincent, thanks for your answer. So, at least for now, can I ignore the warning on macOS for the submission of MIRit? Il mer 7 feb 2024, 12:26 Vincent Carey ha scritto: > Thanks Jacopo. You shouldn't have to struggle. We are aware of > disparities of platform > performance and are

Re: [Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Vincent Carey
Thanks Jacopo. You shouldn't have to struggle. We are aware of disparities of platform performance and are working to improve the build process. It will take time. I believe that achievement of acceptable timings on the linux platform should be the key goal at this time. On Wed, Feb 7, 2024

[Bioc-devel] Check time on macOS (MIRit)

2024-02-07 Thread Jacopo Ronchi
Dear developers, I am struggling to reduce R CMD check times for my package, MIRit, on macOS. The check on linux takes 4 minutes, while on macOS it needs 9/10 minutes. I have severely reduced the size of examples and tests, which now use smaller datasets and cached resources. On linux, unit