On 26 March 2013 09:26, Ulrich Bodenhofer bodenho...@bioinf.jku.at wrote:
Dear colleagues,
One of my students is currently working on a package that we plan to submit
to Bioconductor. I want him to adhere to the Bioconductor coding standards
which I thought were available at
Dear Thomas,
On 1 May 2013 13:43, Thomas Dybdal Pedersen thomas...@gmail.com wrote:
Hi
I'm in the final stage of preparing an mzIdentML parser for submission to
Bioconductor (https://github.com/thomasp85/mzID) The parser is intended to be
quite sparse and not interpret the content of the
the BiocParallel object which can be queried in the
executing code.
Florian
On 2/14/14 7:23 PM, Martin Morgan mtmor...@fhcrc.org wrote:
On 02/14/2014 09:20 AM, Laurent Gatto wrote:
Dear all,
Looking back in my (sparse) notes from the last European Bioc meeting, I
saw two points that were
it.
Definitely. The difference in fonts is what prompted my enquiry in the
first place, not the choice of font per se.
Best wishes,
Laurent
Cheers,
Andrzej
On Wed, Mar 12, 2014 at 1:58 AM, Martin Morgan mtmor...@fhcrc.org wrote:
On 03/11/2014 10:38 AM, Laurent Gatto wrote:
Dear all
Should we then just drop \RequirePackage{helvet} from BiocStyle?
That seems a reasonable solution to me.
Laurent
Cheers,
Andrzej
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On 1 April 2014 06:23, Hervé Pagès hpa...@fhcrc.org wrote:
Hi Andrzej,
On 03/31/2014 02:49 AM, Andrzej Oleś wrote:
Dear Hervé,
just to make sure: is the the same x.y.z versioning scheme as for
software packages already implemented for experiment data packages,
i.e. will there be an
Dear all,
What are your thoughts about adding a new generic to BiocGenerics:
setGeneric(compare, function(x, y, ...) setGeneric(compare))
I have spotted a couple of existing cases on CRAN (lava (S3) and NMF
(S4) with signature function(object, ...)) and CMA::compare (with a very
different
On 11 April 2014 01:19, Hervé Pagès hpa...@fhcrc.org wrote:
Hi Laurent,
On 04/09/2014 12:36 PM, Laurent Gatto wrote:
Dear all,
What are your thoughts about adding a new generic to BiocGenerics:
setGeneric(compare, function(x, y, ...) setGeneric(compare))
I have spotted a couple
On 19 September 2014 18:07, Michael Lawrence wrote:
Hi guys,
This is the problem of mapping back and forth between coordinate spaces,
such as between genomic and transcript space. I think there was some
progress this release cycle (introduction of mapCoords generic, etc), but I
think there
Dear all,
I was under the (wrong) impression that experiment data packages would
be following the same versioning convention as software with even/odd
for release/devel branches.
Would this be something that others would find useful?
Best wishes,
Laurent
On 30 October 2014 17:43, Henrik Bengtsson wrote:
On Thu, Oct 30, 2014 at 10:31 AM, Laurent Gatto lg...@cam.ac.uk wrote:
Dear all,
I was under the (wrong) impression that experiment data packages would
be following the same versioning convention as software with even/odd
for release/devel
Something's fishy with my R devel/Bioc 3.1 installation and I fail to
see what is wrong.
I want to install Homo.sapiens:
library(BiocInstaller)
## Bioconductor version 3.1 (BiocInstaller 1.17.1), ?biocLite for help
biocLite(Homo.sapiens)
## BioC_mirror: http://bioconductor.org
## Using
On 4 November 2014 15:55, Dan Tenenbaum wrote:
Hi Laurent,
- Original Message -
From: Martin Morgan mtmor...@fredhutch.org
To: Laurent Gatto lg...@cam.ac.uk, bioc-devel@r-project.org
Sent: Tuesday, November 4, 2014 5:41:04 AM
Subject: Re: [Bioc-devel] error: 2 arguments passed
On 4 November 2014 20:39, Martin Morgan wrote:
On 11/04/2014 11:03 AM, Laurent Gatto wrote:
On 4 November 2014 13:41, Martin Morgan wrote:
Hi Laurent --
On 11/04/2014 01:33 AM, Laurent Gatto wrote:
Something's fishy with my R devel/Bioc 3.1 installation and I fail to
see what
dtene...@fredhutch.org
wrote:
- Original Message -
From: Laurent Gatto lg...@cam.ac.uk
To: Dan Tenenbaum dtene...@fredhutch.org
Cc: Martin Morgan mtmor...@fredhutch.org, bioc-devel@r-project.org
Sent: Tuesday, November 4, 2014 11:14:08 AM
Subject: Re: [Bioc-devel] error: 2
think I will follow you suggestion.
Best wishes,
Laurent
Hope that helps,
Florian
On 05/11/14 01:55, Laurent Gatto lg...@cam.ac.uk wrote:
On 4 November 2014 20:27, Kasper Daniel Hansen wrote:
Laurent,
If you do
installed.packages()
(note the 'ed') you are told which version of R
candidates and the BiocGenerics
maintainers see this as a useful contribution, I am happy to send a
patch with relevant generic definitions and Rd files.
Best wishes,
Laurent
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, ...)
standardGeneric(fileName))
and mzR
setGeneric(fileName, function(object) standardGeneric(fileName))
I will make sure that the packages I maintain will comply with any of
the above changes.
Best wishes,
Laurent
On 18 November 2014 12:55, Laurent Gatto wrote:
Dear all,
We
Dear all,
I have been using the following in various vignettes/Makefile
ifeq (${R_HOME},)
R_HOME= $(shell R RHOME)
endif
This syntax is GNU specific and now results in warnings when checking
the package:
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s)
Dear all,
Two possible candidates for BiocGenerics:
GenomeInfoDb::species
standardGeneric for species defined from package GenomeInfoDb
function (x)
standardGeneric(species)
environment: 0x7278130
Methods may be defined for arguments: x
Use showMethods(species) for currently available
Thank you all for your answers.
Laurent
On 2 March 2015 23:27, Martin Morgan wrote:
On 03/02/2015 03:18 PM, Laurent Gatto wrote:
Dear all,
I had never realised that CRAN packages that depended on Bioc packages
could actually not be installed with install.packages without setting
Dear Dongmei,
On 28 February 2015 14:08, Li, Dongmei wrote:
Hi,
I have a question on adding data in R package development. This is my
first time to write a R package and I used the Rstudio for it. I save an
example data into .Rda format using the save() function in R and put in
into the
On 23 March 2015 10:17, Wolfgang Huber wrote:
I wonder whether it’d possible to have the website understand URLs like
http://www.bioconductor.org/pkgname
This could resolve to
http://www.bioconductor.org/packages/release/bioc/html/pkgname.html
or
/listinfo/bioc-devel
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Dear Stefano,
On 28 April 2015 16:50, Berri, Stefano wrote:
Hi.
I need a very reproducible way of creating a R builds with a series of
CRAN and Bioconductor packages.
I want to be able to download a specific version or R, a specific
version of all packages and then install them in the
://stat.ethz.ch/mailman/listinfo/bioc-devel
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Dear all,
We are pleased to announce that that European Bioconductor Developers
Conference will take place in Cambridge, England from 7th-8th December
2015.
The meeting is aimed at bioinformaticians, programmers and software
engineers who contribute to the Bioconductor project, or are
re, copying,
>> distribution, or use of this email message is prohibited. If you have
>> received this message in error, please notify the sender immediately by
>> e-mail and delete this email message from your computer. Thank you.
>> _
Dear all,
The Bioconductor build/check results page [1] labels Bioconductor 3.2 as
devel. Shouldn't 3.2 be release?
Laurent
[1] http://bioconductor.org/checkResults/
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On 28 August 2015 20:42, Dan Tenenbaum wrote:
- Original Message -
From: Kasper Daniel Hansen kasperdanielhan...@gmail.com
To: Laurent Gatto lg...@cam.ac.uk
Cc: bioC-devel bioc-de...@stat.math.ethz.ch
Sent: Wednesday, August 26, 2015 2:36:08 PM
Subject: Re: [Bioc-devel
Dear all,
I am querying the PSICQUIC resource using the identically names
Bioconductor package. The query described in the vignette works as
expected.
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
>
Dear all,
There have been some substantial changes in Rstudio's DT package
recently [1], in particular with respect to selecting rows in a
table. One problem is that these updates currently only live on github
(version 0.1.45) while CRAN is stuck at version 0.1 since September
2015. This has
good suggestion.
I suspect similar ones will creep up more and more in the future.
Best wishes,
Laurent
> Best,
> ~G
> On Mar 10, 2016 4:22 PM, "Laurent Gatto" <lg...@cam.ac.uk> wrote:
>
>>
>> Dear all,
>>
>> There have been some substant
,
Laurent
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I do see the same problem for rols. I assume this will clear up at some
point, although any suggestion on how to avoid such glitches would be
helpful.
Laurent
On 25 March 2016 16:42, Zach Skidmore wrote:
> Hi All,
>
> Maybe i'm missing something but I don't quite understand why the "test
>
Dear all,
I find the http://www.rdocumentation.org/ site very useful to refer to
nicely formatted online man pages individually. Unfortunately, this
resource is terribly outdated and not maintained anymore.
I was wondering if Bioconductor had any interest in serving an html
version of
On 15 April 2016 20:59, Leonardo Collado Torres wrote:
> Hi,
>
> I looked at https://guides.github.com/activities/citable-code/ after
> reading http://biorxiv.org/content/early/2016/04/15/048744 (Laurent
> Gatto is the 2nd author).
>
> It got me thinking that maybe with the
e and continue discussion for fixes there,
> I can also test and upload any suggested patches to the SinglePackageBuilder.
>
> Thanks for any help,
> yours,
> Steffen
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ail: etienne.theve...@cea.fr<mailto:etienne.theve...@cea.fr>
> Workflow4metabolomics.org<http://workflow4metabolomics.org/>
> Réseau Francophone de Métabolomique et Fluxomique<http://www.rfmf.fr/>
>
>
> [[alternative HTML version deleted]]
>
> ___
>>> [[alternative HTML version deleted]]
>>>
>>> ___
>>> Bioc-devel@r-project.org mailing list
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>>>
>>>
>>
>> This email mess
Dear all,
What is the equivalent of this URL
http://www.bioconductor.org/packages/3.5/bioc/VIEWS
for data/experiment packages?
Thank you in advance.
Laurent
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s kind of problems ?
>
>
> Thanks very much in advance,
>
>
> Andrea
>
> [[alternative HTML version deleted]]
>
> ___________
> Bioc-devel@r-project.org mailing list
> http
lso the other 3
>>> involved in trying to fix this on our side...
>>> Just to make sure that all have the respective email addresses to try speed
>>> up the debugging...
>>>
>>> Thanks!
>>> Emma
>>> ___
> deadline to pass build without error, are we able to have a little leeway if
> needed? It's taken us the whole day to get the right binaries to actually
> have a chance to start fixing...
> Can someone also check or explain why we no longer receive the emails
> reporting error
",
+ "download.file", "head", "packageDescription", "read.delim",
+ "read.table", "setTxtProgressBar", "tail", "txtProgressBar",
+ "write.table", "zip")
+
+importFrom("
gt;
>> Yours,
>> Steffen
>>
>> --
>> IPB HalleAG Massenspektrometrie & Bioinformatik
>> Dr. Steffen Neumann http://www.IPB-Halle.DE
>> Weinberg 3 Tel. +49 (0) 345 5582 - 1470
>> 06120 Halle
t
[1] https://github.com/sneumann/mzR/issues/52
> Best,
> Kasper
>
> On Thu, Sep 22, 2016 at 10:10 AM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>
>>
>> On 22 September 2016 14:12, Thomas Lawson wrote:
>>
>> > Hi All,
>> >
>> > Than
t;> >>> ERROR
>>> >>>
>>> >>> *** caught segfault ***
>>> >>> address 0x0, cause 'memory not mapped'
>>> >>>
>>> >>> Traceback:
>>> >>> 1: .External(list(name = "CppMethod__invoke_notvoid",
d...
>
> [[alternative HTML version deleted]]
>
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ptable solution for MSnbase, I
will submit an RMassBank patch that will sort the error (and other
things resulting from MSnbase improvements) out. What would be the best
way to submit a patch - email, a pull request to a github repo?
Best wishes,
Laurent
> On 07.10.2016 22:34, Laurent Ga
Dear all,
Kasper gave this recent advice not to call new() in the prototype (or at
least that was how it was interpreted)
You (and everyone else) should not construct new instances by using
new() together with prototype.
This could be handled by setting the version in the initialize
nstead.
>
> Kind regards,
> Nadine Hoffmann___
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_
b5dad0 and modified in Add automatic repair
> for "m/z sort assumption violated !" error in findPeaks (centWave). Version
> Add automatic repair for "m/z sort assumption violated !" error in findPeaks
> (centWave) of R/xcmsRaw.R left in tree.
> error: Failed to merge in the changes.
> Patch failed at 0001 Add automatic repair for "m/z sort assumption violated
> !" error in findPeaks (centWave)
> The copy of the patch that failed is found in: .git/rebase-apply/patch
>
> When you have resolved this problem, run "git rebase --continue".
> If you prefer to skip this patch, run "git rebase --skip" instead.
> To check out the original branch and stop rebasing, run "git rebase --abort".
>
> rebase refs/remotes/git-svn-devel: command returned error: 128
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he law and
> subject the violator to civil or criminal penalties. If you believe you have
> received this message in error, please notify the sender and delete the email
> immediately.
>
> [[alternative HTML version deleted]]
>
> _________
er/lastBuild/consoleText
Is there anything I can do here or is it a server side issue? Could it
be that libnetcdf or libnetcdf-dev is missing?
Thank you in advance.
Best wishes,
Laurent
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The implementation suggestions above are just a sketch and
> could be quite misguided. If there's interest then probably we
> should set up a hangout to discuss in a little more detail.
>
> Martin
>
>
>
that the docs directory (which is about 5.5M for
MSnbase) ends up on hedgehog. It is easy for it not to be part of the
package build artefact using .Rbuildignore, but I am not sure how to
easily push it to github but not hedgehog when using git-svn.
Laurent
On 23 December 2016 16:36, Laurent Gatto wrote
cshttps://
> itsalocke.com/
> auto-deploying-documentation-better-change-tracking-artefacts/
>
> HTH
Thanks, Robert, I will explore this solution too.
Laurent
> Robert
>
> On Fri, Dec 23, 2016 at 1:14 PM Laurent Gatto <lg...@cam.ac.uk> wrote:
>
>
>
is a viable way to go?
>
> Sean
>
> > On Dec 23, 2016, at 12:16 PM, Laurent Gatto <lg...@cam.ac.uk>
> wrote:
> >
> >
> > There's actually another side-effect for Bioconductor. The
> package
> > website is (by defa
/
Best wishes,
Laurent
On 23 December 2016 18:14, Laurent Gatto wrote:
> Dear Sean and Robert,
>
> On 23 December 2016 17:24, Robert M. Flight wrote:
>
>> Yes, this seems like a time where using a non-standard site directory
>> on Github is useful, or as Sean said,
s you to set the branch for the docs directory if I
> recall.
> > Perhaps a separate branch with a docs directory (not master) is a
> viable
> > way to go?
> >
> > Sean
> >
> > > On Dec 23, 2016, at 12:16 PM, Laurent Gatto <lg.
On 23 December 2016 16:36, Laurent Gatto wrote:
> Dear all,
>
> I'm following up re my online references suggestion with my recent
> experience with Hadley's pkgdown package
>
> https://github.com/hadley/pkgdown
>
> It doesn't address the cross-package issue (which is
or details. Please do
raise any concerns or problems in that issue.
Best wishes,
Laurent
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endencies, ... developers and users shouldn't notice the change at
all. The pwiz backend has been available for many years, but was just
not the default.
Let's see what the practice says...
Laurent
> On Tue, May 23, 2017 at 9:10 AM Laurent Gatto <lg...@cam.ac.uk> wrote:
>
SeqArray. Given the
> increasingly widespread use of VCF files, it seems likely that other
> packages may want to use them in future also.
>
> Stephanie
>
> _______
> Bioc-devel@r-project.org mailing list
> https://stat.ethz
gy
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>>
>> E-mail: hpa...@fredhutch.org
>> Phone: (206) 667-5791
>> Fax:(206) 667-1319
&
route we decided to go in the end, so no need
to move export() and import() for us at the moment.
Thanks again for your input.
Best wishes,
Laurent
> H.
>
>
> On 09/18/2017 11:28 PM, Laurent Gatto wrote:
>>
>> Out of curiosity, do you also have an import() function?
>>
>>> On Tue, Sep 12, 2017 at 4:28 PM, Michael Lawrence
>>> <lawrence.mich...@gene.com
>>>> wrote:
>>>
>>>> I think I'm going to vote for the policy that methods with identical
>>>> signatures are currently unsupported by the me
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>
> stat.ethz.ch
> Your email address: Your name (optional): You may enter a privacy password
> below. This provides only mild security, but should prevent others from
> messing with ...
>
>
>
>>
>>
>>
>> This email message may contain legally privileged and/or confidential
>> information. If you are not the intended recipient(s), or the employee or
>> agent responsible for the delivery of this message to the intended
>> recipient(s), you are hereby notified that any disclosure, copying,
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owizard in mzR? is it required in its entirety, or
>> can it be more selectively included? I agree that mzR is often problematic
>> because of the excessive compilation time.
>>
>
> mzR uses Rcpp modules to directly call/use the C++ code from
> proteowizard to read
e looking into it.
>
> Nitesh
>
>
>> On Aug 29, 2017, at 4:43 PM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>>
>>
>> Dear Bioc devel,
>>
>> I am having issues pushing code to the latest release. I currently have
>> the following branches
>>
notationDbi
> and make the method in rols work on GO ids. The code would just need
> to detect whether the strings in the supplied character vector start
> with the "GO:" prefix and delegate to the code in AnnotationDbi (this
> means that rols would need to be able to call that
Dear Bioconductor admins,
When using the search box on www.bioconductor.org, I systematically get
the following error
A timeout or invalid search term resulted in an error.
Best wishes,
Laurent
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Dear all,
It appears that at least two packages, AnnotationDbi and rols, define
the Ontology generic with the same signature
setGeneric("Ontology", function(object) standardGeneric("Ontology"))
Could it be moved to BiocGenerics, please?
Best wishes,
Laurent
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Lau
to find an inherited method for function ‘Ontology’ for signature
‘"character"’
> getMethod("Ontology", "character")
Error in getMethod("Ontology", "character") :
no method found for function 'Ontology' and signature character
> getMethod(&q
On 30 August 2017 12:04, Turaga, Nitesh wrote:
> Hi Laurent,
>
> Please try again and let me know.
Thank you Nitesh, pushed successfully now.
Laurent
>> On Aug 29, 2017, at 5:51 PM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>>
>>
>> On 29 August 2017
tream/master works.
Any help greatly appreciated.
Laurent
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ion deleted]]
>
> _______
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.md
Best wishes,
Laurent
> Best regards,
> Arman
>
>
>
> [[alternative HTML version deleted]]
>
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For those that have BiocStickers, what are your toughts on license and
requiring attributions, as they seem to limit reuse possibilities.
See
https://github.com/Bioconductor/BiocStickers/issues/54
for details.
Best wishes,
Laurent
___
;
> I’ve enabled you to push to your repository, so this does not hold up
> your development.
Thank you.
Best wishes,
Laurent
> Best,
>
> Nitesh
>
>> On Jan 16, 2018, at 10:15 AM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>>
>>
>> Dear all,
>>
>
Dear all,
There are duplicated commit in the Bioconductor commit history of the
qcmetrics package, which stop me from pushing additional changes. Here
is an illustration of the problem:
$ git clone g...@git.bioconductor.org:packages/qcmetrics.git
Cloning into 'qcmetrics'...
cd remote: Counting
On 17 January 2018 18:26, Turaga, Nitesh wrote:
> The problem is not a separate branch from your primary repository. Its
> the branch coming from a “remote” which is not the primary repository
> (i.e Bioconductor).
>
> “rebase" is essentially doing what you do in two separate steps, so
> that
t.com/questions/426394/how-to-check-if-a-rsa-public-private-key-pair-matched)
>
> Also check point #15 on http://bioconductor.org/developers/how-to/git/faq/.
>
>
> Best,
>
> Nitesh
>
>> On Mar 19, 2018, at 8:17 PM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>>
&g
uld it be a configuration issue?
Thank you in advance.
Best wishes,
Laurent
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http://lgatto.github.io/
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o
remotes/upstream. Could you force push for me, please.
Thanks
Laurent
> Best,
>
> Nitesh
>
>> On Mar 20, 2018, at 10:36 AM, Laurent Gatto <lg...@cam.ac.uk> wrote:
>>
>>
>> On 20 March 2018 01:58, Turaga, Nitesh wrote:
>>
>>> Hi Lauren
ical Engineering, IIT Bombay.
>
>
>
>
> [[alternative HTML version deleted]]
>
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--
Laurent Gatto | @lgatt0
http://cpu.sysbiol.cam.ac.uk/
http://lgatto.github.io/
Dear Bioc admins,
I am trying to push the latest changes from my github master branch to
Bioconductor's upstreas/master (called devel below), but can't due to
duplicated commits:
lg390@elyacin [12:56:09] [~/dev/ProteomicsAnnotationHubData] [devel]
-> % git push
Counting objects: 622, done.
gt; This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure,
Travis recently started to fail for Bioc devel (see [0] and [1] for another
possibly related report), which seems to related to a warning in
BiocManager::available():
> BiocManager::version()
[1] ‘3.10’
> str(BiocManager::available())
Warning: unable to access index for repository
No worries at all. Thank you for letting me know.
Laurent
From: Pages, Herve
Sent: 28 May 2019 22:24
To: Laurent Gatto; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] index of Bioc repository unavailable
Hi Laurent,
This is temporary. We're
I would appreciate some background about the following:
> suppressPackageStartupMessages(library("SummarizedExperiment"))
> set.seed(1L)
> m <- matrix(rnorm(16), ncol = 4, dimnames = list(letters[1:4], LETTERS[1:4]))
> rowdata <- DataFrame(X = 1:4, row.names = letters[1:4])
> se1 <-
amespace (and not attached):
[1] BiocManager_1.30.4 compiler_3.6.0 tools_3.6.0
From: Laurent Gatto
Sent: 05 May 2019 04:36
To: bioc-devel@r-project.org
Subject: Possible bug in showAsCell,character
Example code to reproduce the bug report:
> DataFrame(a = 'foo', b = NA_c
Example code to reproduce the bug report:
> DataFrame(a = 'foo', b = NA_character_)
DataFrame with 1 row and 2 columns
Error in if (nchar(x) > n) paste0(paste(strsplit(x, "")[[1]][1:n], collapse =
""), (from reduce.R#6) :
missing value where TRUE/FALSE needed
Suggested patch:
man pages (which can easily be overwhelming
for large packages) are readily available to read and search.
Laurent
From: Martin Morgan
Sent: 25 September 2019 23:10
To: Laurent Gatto; Ludwig Geistlinger; bioc-devel@r-project.org
Subject: Re: [Bioc-devel
TXczYDUsZRCDZgrAxxgjqacXbRhp%2FOmIULkag%3Dreserved=0=
>
> it should not be hard to have it do the same for all other
> packages in principle.
>
> "The other R Core" Martin
>
> Martin Maechler
> ETH Zurich
>
>
> > What is your experience with pkgdown?
I think this would be very useful. This is one of the reasons I create pkgdown
sites for my packages: manual pages, news and html vignettes are readily
available for all (including me) to browse.
Best wishes,
Laurent
From: Bioc-devel on behalf of
Dear all,
Assume we have a SummarizedExperiment object `se` that contains raw count data,
and a method `doProcess` that processes the data to produce a matrix of
identical dimensions (for example log-transformation, normalisation,
imputation, ...). What are the opinions in favour or against
FYI - I can reproduce this on linux with R Under development (unstable)
(2020-03-19 r78011)
From: Bioc-devel on behalf of Vincent Carey
Sent: 16 March 2020 23:52
To: bioc-devel
Subject: [Bioc-devel] proper way to define an S4 method for 'plot'
I just
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