Re: [Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
Many thanks, Herve! - Paul > On Jun 24, 2019, at 7:17 PM, Pages, Herve wrote: > > Hi Paul, > > After a long hunt, the software package causing these daily > reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been > identified and his maintainer contacted. > > Sorry for the inconvenience this has caused so far. > > H. > > On 6/24/19 12:31, Paul Shannon wrote: >> Warning in .seqlengths_TwoBitFile(x) : mustOpen: >>Can't open >> /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit >>to read: No such file or directory >>Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : >> UCSC library operation failed >> >> I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 >> (windows). >> >> Any advice? >> >> - Paul >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
Hi Paul, After a long hunt, the software package causing these daily reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been identified and his maintainer contacted. Sorry for the inconvenience this has caused so far. H. On 6/24/19 12:31, Paul Shannon wrote: > Warning in .seqlengths_TwoBitFile(x) : mustOpen: > Can't open > /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit > to read: No such file or directory > Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : > UCSC library operation failed > > I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 > (windows). > > Any advice? > > - Paul > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
Warning in .seqlengths_TwoBitFile(x) : mustOpen: Can't open /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit to read: No such file or directory Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 (windows). Any advice? - Paul ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
