Hi Will,
Let's keep this on the mailing list.
On 1/13/20 16:00, William Chen wrote:
> Hi Herve,
>
> Thanks for this reply. I have been looking into the R CMD CHECK error
> that has been thrown by the tokay1 builder and am still unsure how to
> potentially mitigate the error message given.
>
By default the reticulate package uses the python command that is in the
PATH. On our Linux and Mac builders the python command found in the PATH
points to Python 2. On our Windows builder it points to Python 3.
So on a non-Windows system, you need to tell reticulate to use the
python3
Hi William,
I can confirm that the phate module is installed for Python 3 on malbec1:
biocbuild@malbec1:~$ python3
Python 3.6.9 (default, Nov 7 2019, 10:44:02)
[GCC 8.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import phate
>>> phate.__version__
Hi all,
A package I maintain on Bioconductor ('phemd') has failed R CMD check on
two of three of the Bioconductor builders (tokay1 and malbec1) with the
following error message:
Error in py_module_import(module, convert = convert) :
ImportError: No module named phate
It looks like this
