Re: [Bioc-devel] use bioc docker images to reproduce linux build error?

2018-11-18 Thread Paul Shannon
Hi Val, Thanks for the pointer. I now import RMariaDB in the NAMESPACE and the DESCRIPTION files. That seemed to solve the problem. When I updated from RMySQL, I failed to do that. I changed .BBSoptions to simply “win” as you suggest, but just as a temporary measure. I don’t remember

Re: [Bioc-devel] use bioc docker images to reproduce linux build error?

2018-11-17 Thread Obenchain, Valerie
If you want to excluded trena from both 32-bit and 64-bit Windows the better .BBSoption is 'win' instead of both 'win32' and 'win64'. Right now it's skipping 32-bit but executing 64-bit. Val On 11/16/18 3:04 PM, Obenchain, Valerie wrote: > Hi Paul, > > I can reproduce the error on my Linux

Re: [Bioc-devel] use bioc docker images to reproduce linux build error?

2018-11-16 Thread Obenchain, Valerie
Hi Paul, I can reproduce the error on my Linux system but not on the Mac and am not sure why this is. Haven't tried Windows yet but from the looks of the build report that one is fine too. R CMD check on Linux is failing on this line in getRegulatoryRegions,HumanDHSFilter-method: db <-

[Bioc-devel] use bioc docker images to reproduce linux build error?

2018-11-15 Thread Paul Shannon
Our package “trena” has had build errors these last two weeks. I have not yet been able to reproduce them on a macOS laptop. Would it be sensible to get the latest release and devel docker images for Bioconductor? Are they similar enough to the build system to give me good odds on