> - BatchJobs: is there support, or are there any plans to support the
> HTCondor infrastructure [1], and will this back-end be supported in
> BiocParallel?
We don't have access to a system running condor, otherwise we would
have implemented support already. I'd either need a temporary account
Thank you all for your replies. I will experiment with the list of
BiocParallelParam objects and BatchJobs package.
Best wishes,
Laurent
> We discussed with Michael Lang at the Cambridge meeting and he agreed
> to think about potential abstractions for nested parallelization
> requests in Batc
We discussed with Michael Lang at the Cambridge meeting and he agreed to
think about potential abstractions for nested parallelization requests in
BatchJobs. Not sure whether that ever took off. Ideally one would be able
to infer the number of requested nodes AND cpus directly from the
BiocParallel
On 02/14/2014 09:20 AM, Laurent Gatto wrote:
Dear all,
Looking back in my (sparse) notes from the last European Bioc meeting, I
saw two points that were mentioned during the BatchJobs and BiocParallel
talk that are of particular interest to me.
- BatchJobs: is there support, or are there any p
I've done quite a bit of this nested parallelism with BatchJobs/SGE over
multicore.
I daresay I haven't looked at BiocParallel as the solutions seemed pretty
obvious
with standard calls. Should BiocParallel have a vignette that indicates
added value?
I would like us to have a worked demonstratio
On Fri, Feb 14, 2014 at 9:20 AM, Laurent Gatto wrote:
>
> Dear all,
>
> Looking back in my (sparse) notes from the last European Bioc meeting, I
> saw two points that were mentioned during the BatchJobs and BiocParallel
> talk that are of particular interest to me.
>
> - BatchJobs: is there suppo
Dear all,
Looking back in my (sparse) notes from the last European Bioc meeting, I
saw two points that were mentioned during the BatchJobs and BiocParallel
talk that are of particular interest to me.
- BatchJobs: is there support, or are there any plans to support the
HTCondor infrastructure
