gives a paragraph on current known knowledge for a protein)
> field from within biomaRt.
>
>
>
> What do you guys think?
>
> Thanks for your feedback!
>
>
>
> Cheers,
>
>
>
> Aditya
>
>
>
>
>
> *From:* Karim Mezhoud [mailto:kmezh...@gmail.com]
in biomaRt.
What do you guys think?
Thanks for your feedback!
Cheers,
Aditya
From: Karim Mezhoud [mailto:kmezh...@gmail.com]
Sent: Wednesday, September 13, 2017 1:35 PM
To: Vincent Carey
Cc: Aditya Bhagwat; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Creating an org.Hs.uniprot.db package
Hi
Hi,
I general LCMSMS generate mass/charge data of Amino Acid or peptides.
The goal in to identify which protein belong the peptides.
The Software used with LCMSMS can match the peptides to Uniprot database ,
and ranks putative proteins by scores.
Could the tell us what is the interest of org.Hs.un
can you say a little more about what resource will be tapped and what it
will look like? you can
already use uniprot identifiers as keys into org.Hs.eg.db
On Tue, Sep 12, 2017 at 9:05 AM, Aditya Bhagwat <
adb2...@qatar-med.cornell.edu> wrote:
> Hey guys,
>
> I love the org.Hs.eg.db package (and
From: Rainer Johannes [johannes.rai...@eurac.edu]
Sent: Wednesday, September 13, 2017 8:49 AM
To: Aditya Bhagwat; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Creating an org.Hs.uniprot.db package
Hi Aditya,
you could check the more recent ensembldb EnsDb
Hi Aditya,
you could check the more recent ensembldb EnsDb databases to see if
there is something in them you might need/want.
I've added protein annotations to them (as provided by Ensembl). They
contain the Ensembl protein domains, the AA sequence, all protein domain
families (as defined/linked
Hey guys,
I love the org.Hs.eg.db package (and similar others for other organisms).
I work a lot with LCMSMS proteomics data, and I have always missed a similar
org.Hs.uniprot.db package, so I am thinking of creating that (and then sharing
it on BioC, to benefit fellow proteomics R users).
Wou
